Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical ...    29   4.4  
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie...    28   5.8  
AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine re...    28   5.8  
U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF038615-7|AAB94147.1|  479|Caenorhabditis elegans Hypothetical
           protein R02D3.7 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -1

Query: 396 EHQCGIRKIKP*DL---IVKIHRKHQNIGFSLSTLQNSTIQTTDKSRRASA 253
           +++C ++ I   D+    V+ +R+ + +GF   T ++S I  + K RRA A
Sbjct: 349 DYECKLKYISKNDIRNITVRYNREREKLGFLTDTAKSSAIPISLKERRAVA 399


>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human niemann
            pick c disease)related protein 1 protein.
          Length = 1383

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -3

Query: 343  SSKTPKYRIFIKHPTKFYNTNYRQKSSCFGTKRCRN-IDIVIILN-FKKKSIRTH 185
            S K+P  ++++  P  F +TN R KS+    K CR  +D   + N + K SI  H
Sbjct: 971  SRKSPCCKVYVHDPNTFCSTN-RNKSA-LDDKACRTCMDFDYVANSYPKSSIMYH 1023


>AF025463-4|AAB71010.2|  344|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 3 protein.
          Length = 344

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 593 KSVYLYENYIVLHYNFSVCSYLKCL 667
           K+  L ++Y +LH NF++C    CL
Sbjct: 44  KTPKLLQSYSMLHLNFALCDLFSCL 68


>U41548-2|AAA83204.1|  399|Caenorhabditis elegans Hypothetical
           protein M02F4.1 protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = -3

Query: 382 NKENKTLRFNSKNSSKTPKYRIFIKHPTKFYNTNYRQKSSCFGTKRCRNIDI 227
           +K ++ L  ++++ SKT   R+  +H  +  +    +KS   GT +CR+ D+
Sbjct: 133 SKSDRDLERSAESGSKTRDSRLRRRHEVEDDDVVEEKKSHRRGTSKCRSQDL 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,615
Number of Sequences: 27780
Number of extensions: 314145
Number of successful extensions: 691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)