Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   5.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   8.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   8.9  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 209 KIKNNHDIYVSTSLGAEARRLLSVV 283
           KIK  H+++V+  L A A  L  V+
Sbjct: 270 KIKRKHNVFVNNILAASACSLFVVI 294


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 436 KIIVLINTLFVTWRTPMWNKENKTLRFNSKNSS 338
           K+I +   L  T  T  W KEN  L    K+ S
Sbjct: 187 KVISISPDLVETDMTAQWLKENSRLALKPKDVS 219


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 162 YTLNN*IVLGKILIRSTILRINTKCLLFITIFN 64
           +T+N+   + +IL    +L+ N  C+L   +F+
Sbjct: 21  HTINSKKTIMRILKEVCVLQANRACILIKDLFD 53


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 162 YTLNN*IVLGKILIRSTILRINTKCLLFITIFN 64
           +T+N+   + +IL    +L+ N  C+L   +F+
Sbjct: 4   HTINSKKTIMRILKEVCVLQANRACILIKDLFD 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,756
Number of Sequences: 438
Number of extensions: 4248
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)