Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0097
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33610.1 68415.m04119 SWIRM domain-containing protein / DNA-b...    29   2.3  
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    29   2.3  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    29   2.3  
At5g48170.1 68418.m05950 F-box family protein contains Pfam PF00...    27   9.5  

>At2g33610.1 68415.m04119 SWIRM domain-containing protein /
           DNA-binding family protein contains similarity to
           SWI/SNF complex 170 KDa subunit [Homo sapiens]
           gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
           SWIRM domain, PF00249: Myb-like DNA-binding domain
          Length = 469

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 358 FNSKNSSKTPKYRIFIKHP-TKFYNTNYRQKSSCFGTKRCRNIDIVII 218
           F+S++SSK PK+ +++++   K Y  ++ +K S    +R    D+V I
Sbjct: 74  FDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSI 121


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 346 NSSKTPKYRIFIKHPTKFYNTNYRQKSSCFGTKRCRNID 230
           +++ TP Y   +K      +  YR K S FGT R  N+D
Sbjct: 499 SAASTPVYHRDVKTTNILLDEKYRAKVSDFGTSRSINVD 537


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 346 NSSKTPKYRIFIKHPTKFYNTNYRQKSSCFGTKRCRNID 230
           +++ TP Y   +K      +  YR K S FGT R  N+D
Sbjct: 536 SAASTPVYHRDVKTTNILLDEKYRAKVSDFGTSRSINVD 574


>At5g48170.1 68418.m05950 F-box family protein contains Pfam
           PF00646: F-box domain; similar to unknown protein
           (pir||T09884);
          Length = 157

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = +2

Query: 203 LFKIKNNHDIYVSTSLGAEARRLLSVVCIVEFCRVLNENPIFW---CFR 340
           +F I ++HD+ V      +   L S  C+      +  N   W   CFR
Sbjct: 25  VFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFR 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,672,031
Number of Sequences: 28952
Number of extensions: 262844
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)