Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0094
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 34 0.027
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 30 0.44
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 28 1.3
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 28 1.3
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 4.1
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 4.1
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 5.4
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 26 5.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 9.4
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 25 9.4
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 33.9 bits (74), Expect = 0.027
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 453 SSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNSKEVRRSSI-GTTSPTYHKNSYASL 629
S++ Y P + V + KP + DAAK++ + +R+ I T S T N+YAS
Sbjct: 425 STQYYQPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLRQMDITPTASSTTANNAYASA 484
Query: 630 DP 635
+P
Sbjct: 485 EP 486
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 187 SLKIDLT*GLWDSTPLVPKWTVCTLLSATLLEGTFSSD--VDNVVTRNFFLS 38
SL IDL+ +W+ PL +W+ L S++ + TF + +++ T FFL+
Sbjct: 103 SLLIDLS--IWNIVPLNARWSALLLYSSSFMATTFQTHTFTNSIETIFFFLT 152
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +3
Query: 360 TENQEISKDDQNL--VDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPH 512
TEN I +Q + +D S + HTV+ ASS+K T + D K H
Sbjct: 140 TENPTIPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGS-TSLTDTENQKAH 191
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 15 NENQTIVGERKKFLVTTLSTSDEKVPSSSVAESN 116
+ N T GE+K + TTLST+ PSS + SN
Sbjct: 406 SSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSN 439
>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 463 NIVL*LG*WTFSEANRILKIIKLLQMQRKRKILKKFGV 576
N +L +G W+ SE K+++LL +KR+ ++K +
Sbjct: 112 NTLLKMG-WSISEKKMKKKLLELLAKNKKRRTMRKLEI 148
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 123 YVHYFLLHYWKEPFHQMWIMS*QETSSFPL 34
Y Y L ++ EP + W++ ETS++ L
Sbjct: 126 YFEYKKLRFYLEPLNLQWVLMPLETSAYSL 155
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 600 TYHKNSYASLDPVQAKQLFREVRGLPKYDPYL 695
T H S S +PV+ + + E +P D YL
Sbjct: 384 TKHSTSLPSTEPVEVDKQYMESEKIPTIDEYL 415
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = +3
Query: 453 SSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNSKEVRRSSIGTTSPTYHKNSYASLD 632
S Y + V RS+PHS +++NS++ ++ Y +N+Y D
Sbjct: 164 SQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNN---KDGGYRRNNYRDRD 220
Query: 633 PVQAKQLFREVRGLPKYDP 689
+ + +R R ++ P
Sbjct: 221 SNRYRNSYRPSRPQREHSP 239
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/76 (21%), Positives = 33/76 (43%)
Frame = +3
Query: 369 QEISKDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPHSENNQTPADAAK 548
+ +SK ++ + + K+ Y S +++ + R + + + N P D +
Sbjct: 98 EHLSKRRKSQREKQEQLQKEKYEKENPKVSSQFADLKRGLSTLTDEDWN-NIPEPGDLTR 156
Query: 549 KKNSKEVRRSSIGTTS 596
KK +K+ RR TS
Sbjct: 157 KKRTKQPRRERFYATS 172
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 628 STLYKPSNYFEKLEGFLSMIHIYRLYKYLSEVETKQTFG 744
S L P + FEK+ ++ +YR+ Y+ ++ KQ FG
Sbjct: 113 SVLDSPPHEFEKVMN-INTNSVYRVAYYMGKIFKKQGFG 150
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,178,377
Number of Sequences: 5004
Number of extensions: 65281
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -