Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0094
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15826| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0) 31 1.1
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08) 31 1.4
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_37805| Best HMM Match : DoxA (HMM E-Value=1.7) 29 3.3
SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21) 28 7.5
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2) 28 10.0
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 10.0
>SB_15826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +3
Query: 441 VTGASSRKYSPI--TRVMDIFRSKPHSENNQTPADAAKKKNSKEVRRSSIGTTSPTYHKN 614
+TG + YS T++ D+ RS P +++Q A KKK K R + TSP+ K+
Sbjct: 16 LTGLAVDSYSLALQTKMADVTRSLPSEKSSQNQAKKRKKKKQKTHR--PVTETSPSTRKD 73
Query: 615 S 617
S
Sbjct: 74 S 74
>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
Length = 1035
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +3
Query: 375 ISKDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPHSENNQTPADAAKKK 554
ISK+DQ+ + ++KD+ +K TVT +S + S ++R + + S D AK++
Sbjct: 378 ISKEDQSRIKSSKDAKEK---TVTSNNSSESSMLSRAIPTVKLTSGS-FKPFAKDPAKQE 433
Query: 555 NSKEVRRSSIGTTSPT 602
+ I +T+PT
Sbjct: 434 RYERFLSGEITSTAPT 449
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/71 (23%), Positives = 32/71 (45%)
Frame = +3
Query: 462 KYSPITRVMDIFRSKPHSENNQTPADAAKKKNSKEVRRSSIGTTSPTYHKNSYASLDPVQ 641
KY P+ ++ KPH N + + N +++ + +Y+K A L
Sbjct: 562 KYLPLRKISICSSDKPHYINLEM---THRNSNVQKLCSGRVQKKQASYYKTKVAKLKNTN 618
Query: 642 AKQLFREVRGL 674
K+ ++EV+GL
Sbjct: 619 VKRWWKEVKGL 629
>SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08)
Length = 244
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +3
Query: 357 TTENQEISKDDQNLVDTNKDSHKKYYHTVTGASSRKYSPIT-RVMDIFRSKPHSENNQTP 533
+TEN+E S + T K+ KY+ + S+R+Y + +++ + + HS TP
Sbjct: 77 STENEEKSCMVERWNRTMKEKMFKYF---SANSTRRYVDVLGEMVNRYNNTKHSSIKMTP 133
Query: 534 ADAAKKKNSKEV 569
A+ KKN V
Sbjct: 134 VAASDKKNESAV 145
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 164 RPLGFYTSSPKMDCMYITFCYTTGRNLFIRC 72
+P G+Y + PK DC FCY + +L RC
Sbjct: 571 KPRGYY-ADPK-DCAQFYFCYGSAESLLSRC 599
>SB_37805| Best HMM Match : DoxA (HMM E-Value=1.7)
Length = 788
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 607 IKIHMLLSTLYKPSNYFEKLEGFLSMIHIYRLYKYLSEVETKQTF 741
I + LL+ LY+ EKL+G++ + RL K+++E + TF
Sbjct: 73 INDYRLLAKLYQTGTAAEKLKGYVIPDRLARLKKFMAEGQQLGTF 117
>SB_42739| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-21)
Length = 683
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 489 DIFRSKPHSENNQTPADAAKKKNSKEVRRSSIGTTSPTYHKNSYASLD 632
DI S+P+++NN A K S++V S T+S ++N L+
Sbjct: 261 DIEASEPNNDNNNDAILAGTKDPSRQVHASFSQTSSDVVYENLLIDLE 308
>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
Length = 415
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 12 PNENQTIVGERKKFLVTTLSTSDEKVPSSSVAESNVHT 125
P E Q +G L+T +T D+K+ + +V S+ ++
Sbjct: 297 PEERQESIGSTNSMLITGETTEDKKMENQAVPRSDTNS 334
>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1894
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 12 PNENQTIVGERKKFLVTTLSTSDEKVPSSSVAESNVHT 125
P E Q +G L+T +T D+K+ + +V S+ ++
Sbjct: 942 PEERQESIGSTNSMLITGETTEDKKMENQAVPRSDTNS 979
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 27.9 bits (59), Expect = 10.0
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +3
Query: 372 EISKDDQNLVDTNKD----SHKKYYHTVTGASSRKYSP-ITRVMDIFRSKPHSENNQTPA 536
++ + D + D NK K+ Y +SS SP T + F KP N+
Sbjct: 426 QLKRKDVVIADLNKVVEDYKRKESYGLFRESSSEDSSPSTTSTPESFEEKPKHARNKEKK 485
Query: 537 DAAKKKNSKEVRRSSIGTT 593
KKK KE + ++ GT+
Sbjct: 486 KEVKKKKGKE-KSTTSGTS 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,265,953
Number of Sequences: 59808
Number of extensions: 423532
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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