Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0094
(792 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 3.6
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 3.6
AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-... 31 3.6
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 31 3.6
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 3.6
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 31 3.6
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 3.6
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 31 3.6
AL136945-1|CAB66879.1| 311|Homo sapiens hypothetical protein pr... 31 4.8
AF065392-1|AAD09747.1| 311|Homo sapiens ZIS2 protein. 31 4.8
AF065391-1|AAD09746.1| 337|Homo sapiens ZIS1 protein. 31 4.8
U13616-1|AAA64834.1| 4377|Homo sapiens ankyrin G protein. 30 8.3
AL592430-3|CAI40518.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 30 8.3
AL359377-2|CAI41373.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 30 8.3
AL359267-1|CAH73232.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 30 8.3
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-27
protein.
Length = 148
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 9 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 68
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 69 SNKRSRSGSQGRT 81
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 296 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 355
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 356 SNKRSRSGSQGRT 368
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 296 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 355
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 356 SNKRSRSGSQGRT 368
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 31.5 bits (68), Expect = 3.6
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 554
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 555 NSKEVRRSSIGTT 593
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AL136945-1|CAB66879.1| 311|Homo sapiens hypothetical protein
protein.
Length = 311
Score = 31.1 bits (67), Expect = 4.8
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNS 560
++D N +N+ S K + + +SSR SP + RS+ S + + + ++ ++S
Sbjct: 190 EEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS-----RSRSRSRSRSSSSSQSRSRSS 244
Query: 561 KEVRRSSIGTTSPTYHKNSYASL----DPVQAKQLFREVRGLPKYDPYLSIVQISIGGRD 728
R S G+ S + +++ A L D +Q L +RG + + L ++ + I +D
Sbjct: 245 SRERSRSRGSKSRSSSRSTGALLPHEKDLIQVHHLL--LRGTER-EVVLDLLHLVIAKKD 301
Query: 729 KTD 737
+ D
Sbjct: 302 EQD 304
>AF065392-1|AAD09747.1| 311|Homo sapiens ZIS2 protein.
Length = 311
Score = 31.1 bits (67), Expect = 4.8
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNS 560
++D N +N+ S K + + +SSR SP + RS+ S + + + ++ ++S
Sbjct: 190 EEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS-----RSRSRSRSRSSSSSQSRSRSS 244
Query: 561 KEVRRSSIGTTSPTYHKNSYASL----DPVQAKQLFREVRGLPKYDPYLSIVQISIGGRD 728
R S G+ S + +++ A L D +Q L +RG + + L ++ + I +D
Sbjct: 245 SRERSRSRGSKSRSSSRSTGALLPHEKDLIQVHHLL--LRGTER-EVVLDLLHLVIAKKD 301
Query: 729 KTD 737
+ D
Sbjct: 302 EQD 304
>AF065391-1|AAD09746.1| 337|Homo sapiens ZIS1 protein.
Length = 337
Score = 31.1 bits (67), Expect = 4.8
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Frame = +3
Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNS 560
++D N +N+ S K + + +SSR SP + RS+ S + + + ++ ++S
Sbjct: 190 EEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS-----RSRSRSRSRSSSSSQSRSRSS 244
Query: 561 KEVRRSSIGTTSPTYHKNSYASL----DPVQAKQLFREVRGLPKYDPYLSIVQISIGGRD 728
R S G+ S + +++ A L D +Q L +RG + + L ++ + I +D
Sbjct: 245 SRERSRSRGSKSRSSSRSTGALLPHEKDLIQVHHLL--LRGTER-EVVLDLLHLVIAKKD 301
Query: 729 KTD 737
+ D
Sbjct: 302 EQD 304
>U13616-1|AAA64834.1| 4377|Homo sapiens ankyrin G protein.
Length = 4377
Score = 30.3 bits (65), Expect = 8.3
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 474 ITRVMDIFRSKPHSENN--QTPADAAKKKNSKEVRRSSIGTTSP--TYHKNSYASLDP-V 638
+T V FR K N+ Q+P A+ KN KE S ++SP AS D V
Sbjct: 2588 LTEVSQFFRDKTEKLNDELQSPEKKARPKNGKEYSSQSPTSSSPEKVLLTELLASNDEWV 2647
Query: 639 QAKQLFREVRGLPK 680
+A+Q + +G PK
Sbjct: 2648 KARQHGPDGQGFPK 2661
>AL592430-3|CAI40518.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 30.3 bits (65), Expect = 8.3
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 474 ITRVMDIFRSKPHSENN--QTPADAAKKKNSKEVRRSSIGTTSP--TYHKNSYASLDP-V 638
+T V FR K N+ Q+P A+ KN KE S ++SP AS D V
Sbjct: 2583 LTEVSQFFRDKTEKLNDELQSPEKKARPKNGKEYSSQSPTSSSPEKVLLTELLASNDEWV 2642
Query: 639 QAKQLFREVRGLPK 680
+A+Q + +G PK
Sbjct: 2643 KARQHGPDGQGFPK 2656
>AL359377-2|CAI41373.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 30.3 bits (65), Expect = 8.3
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 474 ITRVMDIFRSKPHSENN--QTPADAAKKKNSKEVRRSSIGTTSP--TYHKNSYASLDP-V 638
+T V FR K N+ Q+P A+ KN KE S ++SP AS D V
Sbjct: 2583 LTEVSQFFRDKTEKLNDELQSPEKKARPKNGKEYSSQSPTSSSPEKVLLTELLASNDEWV 2642
Query: 639 QAKQLFREVRGLPK 680
+A+Q + +G PK
Sbjct: 2643 KARQHGPDGQGFPK 2656
>AL359267-1|CAH73232.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 30.3 bits (65), Expect = 8.3
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Frame = +3
Query: 474 ITRVMDIFRSKPHSENN--QTPADAAKKKNSKEVRRSSIGTTSP--TYHKNSYASLDP-V 638
+T V FR K N+ Q+P A+ KN KE S ++SP AS D V
Sbjct: 2583 LTEVSQFFRDKTEKLNDELQSPEKKARPKNGKEYSSQSPTSSSPEKVLLTELLASNDEWV 2642
Query: 639 QAKQLFREVRGLPK 680
+A+Q + +G PK
Sbjct: 2643 KARQHGPDGQGFPK 2656
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,270,667
Number of Sequences: 237096
Number of extensions: 2010058
Number of successful extensions: 4368
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4368
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9701808132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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