Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0094
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC024781-2|AAK39328.2|  311|Caenorhabditis elegans Hypothetical ...    29   3.8  
L14745-4|AAA27921.1|  419|Caenorhabditis elegans Hypothetical pr...    28   8.8  
L14745-3|AAM15539.1|  450|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +3

Query: 3   VEPPNENQTIVGERKKFLV-TTLSTSD--EKVPSSSVAESNVHTVHFGTRGVESQ 158
           +EP ++++ + G++  F+V TT S++D   K+P     ++  HT++   R   +Q
Sbjct: 70  IEPVDKDRRLKGQQLPFIVRTTYSSTDFESKMPKKQREKAGNHTINMDPRAEPTQ 124


>AC024781-2|AAK39328.2|  311|Caenorhabditis elegans Hypothetical
           protein Y43H11AL.2 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 376 ISWFSVVFDCCCFDAFLASLFLLMR 302
           + W +    CCCFDA + S + L R
Sbjct: 265 LPWLAGSLGCCCFDAVIISQYYLYR 289


>L14745-4|AAA27921.1|  419|Caenorhabditis elegans Hypothetical
           protein C02F5.6a protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 471 PITRVMD---IFRSKPHSENNQTPADAAKKKNSKEVRRSSI 584
           P+ R+++   +   +P  +N+Q P D   KKN+ E  R SI
Sbjct: 31  PLDRILETANVEEFRPKFKNHQDPNDRKNKKNNDEEWRDSI 71


>L14745-3|AAM15539.1|  450|Caenorhabditis elegans Hypothetical
           protein C02F5.6b protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 471 PITRVMD---IFRSKPHSENNQTPADAAKKKNSKEVRRSSI 584
           P+ R+++   +   +P  +N+Q P D   KKN+ E  R SI
Sbjct: 31  PLDRILETANVEEFRPKFKNHQDPNDRKNKKNNDEEWRDSI 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,149
Number of Sequences: 27780
Number of extensions: 351261
Number of successful extensions: 1131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)