Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0094
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.9  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 600 TYHKNSYASLDPVQAKQLFREVRGLPKYDPYLSIVQISIGGRDKTDFW*IFSNIINVTRC 779
           +Y+   Y S+D +  K L   +    KY    S ++I         F+ I+  II+    
Sbjct: 372 SYNTEFYGSIDTLARKILGYNLEAASKYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHS 431

Query: 780 Y 782
           Y
Sbjct: 432 Y 432


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +3

Query: 600 TYHKNSYASLDPVQAKQLFREVRGLPKYDPYLSIVQISIGGRDKTDFW*IFSNIINVTRC 779
           +Y+   Y S+D +  K L   +    KY    S ++I         F+ I+  II+    
Sbjct: 372 SYNTEFYGSIDTLARKILGYNLEAASKYQIVPSALEIFSTSMKDPAFYRIYKRIIDYYHS 431

Query: 780 Y 782
           Y
Sbjct: 432 Y 432


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 355 KRPKTKRSQ 381
           KRPKTK+SQ
Sbjct: 39  KRPKTKKSQ 47


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 112 LSATLLEGTFSSDVDNVVT 56
           L A  L+G F SD++ V T
Sbjct: 528 LEAIRLDGNFLSDINGVFT 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,899
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)