Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0094
         (792 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50680.1 68414.m05699 AP2 domain-containing transcription fac...    30   1.5  
At2g01560.1 68415.m00080 hypothetical protein                          30   2.0  
At5g06110.1 68418.m00679 DNAJ heat shock N-terminal domain-conta...    29   3.5  
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   4.7  
At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    29   4.7  
At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    28   6.2  
At5g62240.1 68418.m07815 expressed protein various predicted pro...    28   8.2  
At3g43682.1 68416.m04659 hypothetical protein                          28   8.2  
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ...    28   8.2  
At1g45150.1 68414.m05176 expressed protein                             28   8.2  

>At1g50680.1 68414.m05699 AP2 domain-containing transcription
           factor, putative similar to RAV1 [Arabidopsis thaliana]
           GI:3868857
          Length = 337

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +3

Query: 12  PNENQTIVGERKKFLVTTLSTSDEKVPSSSVAESNVHTVHFGTRGVESQRPHVRSIFKDR 191
           PN  +T+ G+RK FL+  +    +    S VAE    TVH  +  V+     V S+ +D+
Sbjct: 259 PNNVKTLEGQRKNFLMIDVHCFSDN--GSVVAEEVSMTVHDSSVQVKKTENLVSSMLEDK 316

Query: 192 SVET 203
             ++
Sbjct: 317 ETKS 320


>At2g01560.1 68415.m00080 hypothetical protein
          Length = 277

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +3

Query: 360 TENQEISKDDQNLVDTN----KDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPHSENNQ 527
           T N EI    ++L + +    K  +K       G + +K  PI+ +  +  + P+  ++Q
Sbjct: 88  TSNVEIENSFEDLAEASTSFTKPDNKPRAKRSKGKNKQKQHPISPIHSLIETAPNDASSQ 147

Query: 528 TPADAAKKKNS 560
            P +AA   +S
Sbjct: 148 VPQEAATANSS 158


>At5g06110.1 68418.m00679 DNAJ heat shock N-terminal
           domain-containing protein / cell division
           protein-related similar to GlsA [Volvox carteri f.
           nagariensis] GI:4633129; contains Pfam profiles PF00226
           DnaJ domain, PF00249 Myb-like DNA-binding domain
          Length = 663

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 492 IFRSKPHSENNQTPADAAKKKNSKEVRRSSIGTTSPTYHKNSYA-SLDPVQAKQLFREVR 668
           I  +K H +NN T  + A++    +   +S G + P     S       VQ + L + ++
Sbjct: 561 IIPTKAHEDNNSTKTETAEQNGKTKENNNSNGNSEPAAASGSDPDGWSAVQERALVQALK 620

Query: 669 GLPK 680
             PK
Sbjct: 621 TFPK 624


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 357 TTENQEISKDDQNLVDTNKDSHKKYYHTVTGASS 458
           TTE ++I++DD N    N+D  + +  T+  ASS
Sbjct: 619 TTETKQINEDDINTTIVNQDGVESHTFTIPVASS 652


>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 185 FKNRSHMRPLGFYTSSPKMDCMYITFCYTTGRNLFIRCG*CR 60
           F ++SH  PL   TSS   +  Y   C   G   +++C  C+
Sbjct: 590 FTHKSHKHPLFISTSSKGENKTYCVGCKKIGMRSYLQCTICK 631


>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 642 AKQLFREVRGLPKYDPYLSIVQISIGGR 725
           A++  + + GLPK+D Y S+  +  GG+
Sbjct: 278 ARRNLKGLEGLPKFDDYASVKLVDYGGK 305


>At5g62240.1 68418.m07815 expressed protein various predicted
           proteins, Arabidopsis thaliana; expression supported by
           MPSS
          Length = 366

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 522 NQTPADAAKKKNSKEVRRSSIGTTSPTYH--KNSYASLDPVQAKQLFREVRGLPKYDPYL 695
           NQT  D +KKK+  + + S+   T PT          LD    + L R  R L K+   +
Sbjct: 109 NQTVKDVSKKKSKSKTKTSNSTLTRPTASLLARQNKPLDIYSVQLLTRCQRSLAKFGENV 168

Query: 696 SIVQIS 713
           + V +S
Sbjct: 169 APVLVS 174


>At3g43682.1 68416.m04659 hypothetical protein
          Length = 150

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 87  VPSSSVAESNVHTVHFGTRGVESQRPHVRSIFK 185
           VPS S+ + +  +    ++G ESQ  H R+ FK
Sbjct: 11  VPSESICKPSSASASSSSKGCESQNSHNRNCFK 43


>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
           protein / PEP carboxylase family protein similar to
           SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
           4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 1032

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +1

Query: 529 LLQMQRKRKILKKFGVPQLELRLLLIIKIHMLLSTLYKPS-NYFEKLEGFLSMIHIYRLY 705
           L   ++   +  KFG+PQ  +R L +    +LL+TL  P     EK    +  I      
Sbjct: 761 LRSTEQGEMVQAKFGIPQTAVRQLEVYTTAVLLATLKPPQPPREEKWRNLMEEISGISCQ 820

Query: 706 KYLSEVETKQTFGKFF 753
            Y S V     F  +F
Sbjct: 821 HYRSTVYENPEFLSYF 836


>At1g45150.1 68414.m05176 expressed protein
          Length = 643

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 381 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPH 512
           K D+ L D+   ++   Y  V      + S + + ++I RSKPH
Sbjct: 348 KSDEYLSDSRLAAYAVPYRQVIAGDDSRESYLRKEVEILRSKPH 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,312
Number of Sequences: 28952
Number of extensions: 313697
Number of successful extensions: 911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)