Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0093
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...   281   5e-77
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   1.0  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   5.5  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   5.5  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    26   5.5  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score =  281 bits (690), Expect = 5e-77
 Identities = 128/189 (67%), Positives = 156/189 (82%)
 Frame = +2

Query: 83  KYSILLPTYNERENLPIIIWLIIKYLDESLVDYEVIIIDDGSPDGTSEVARQLQKLYGSS 262
           KYS+LLPTYNER+NLPII +LI K  D+  +D+E++IIDD SPDGT EVA++LQK+YG  
Sbjct: 3   KYSVLLPTYNERKNLPIITYLIAKTFDQEKLDWEIVIIDDASPDGTQEVAKELQKIYGED 62

Query: 263 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 442
           KI+L+PR  KLGLGTAYIHG++ A+G+F+IIMDAD SHHPK++PEFIKLQ +++YDIV G
Sbjct: 63  KILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDADFSHHPKYLPEFIKLQKEHNYDIVLG 122

Query: 443 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSK 622
           TRY   GGVYGW+ KRK ISRGAN L   +L  GVSD+TGSFRLYKK VLE L+    SK
Sbjct: 123 TRYAKDGGVYGWNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTSK 182

Query: 623 GYVFQMEMI 649
           GYVFQME+I
Sbjct: 183 GYVFQMEII 191


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 289 EAWTRNCLHSWDTASFWKFYY 351
           E + +NC   WD++ FWK ++
Sbjct: 41  EKYAKNCNTIWDSSKFWKQFF 61


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 198 MMEALMGLQKWRVSCRSSMAPLK*CFDLAR*SLDSELPTF 317
           M+   +G+QKW +   S M+P     D  R   DS +PT+
Sbjct: 452 MLSEEIGIQKWIIQSLSKMSPT--LNDFCR-RYDSSMPTY 488


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 270 CFDLAR*SLDSELPTFMGYSKLL 338
           C+D+ R +LD E PT+   ++L+
Sbjct: 213 CYDICRRNLDIERPTYENLNRLI 235


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 53  EVDSGLIKRDKYSILLPTYNERENLPIIIWLI---IKYLDESLVDYEVIIIDDGSPDGTS 223
           ++D  +IK  K    LP  +   N P +   I    K+L +    ++VII D   PDG +
Sbjct: 119 DIDEDVIKVSKQ--YLPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDSSDPDGPA 176

Query: 224 EVARQ 238
           E   Q
Sbjct: 177 EALFQ 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,650,553
Number of Sequences: 5004
Number of extensions: 53528
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)