Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0093
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 240 8e-64
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853... 56 2e-08
04_04_0886 - 29089083-29089211,29089702-29089890,29089968-290901... 31 0.61
05_03_0553 - 15389376-15389499,15391167-15391576 30 1.4
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 30 1.4
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 29 3.2
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 29 4.3
10_01_0318 + 3493913-3496976,3497064-3497392 28 5.6
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 28 7.5
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 27 9.9
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 240 bits (587), Expect = 8e-64
Identities = 116/209 (55%), Positives = 156/209 (74%), Gaps = 17/209 (8%)
Frame = +2
Query: 77 RDKYSILLPTYNERENLPIIIWLIIKYLDESLVDYEVIIIDDGSPDGTSEVARQLQKLYG 256
R +YSI++PTYNER N+ +I++LI K+L + V++E+I++DDGSPDGT ++ +QLQ++YG
Sbjct: 9 RREYSIIVPTYNERLNVALIVYLIFKHLPD--VNFEIIVVDDGSPDGTQDIVKQLQQIYG 66
Query: 257 SSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFI----------- 403
++++LR R KLGLGTAY+HG++ ASG+F++IMDADLSHH I E +
Sbjct: 67 ENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHMLEISETLEQSPLQLDSYQ 126
Query: 404 ------KLQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGS 565
K Q + D+V+GTRY +GGV+GW+ RKL SRGAN L Q +L+PG SDLTGS
Sbjct: 127 GYYTDKKKQKETGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGS 186
Query: 566 FRLYKKEVLEKLILSCVSKGYVFQMEMII 652
FRLYK+ VLE LI SCVSKGYVFQMEMI+
Sbjct: 187 FRLYKRNVLEDLISSCVSKGYVFQMEMIV 215
>03_06_0489 -
34284301-34284336,34285104-34285227,34285307-34285371,
34285472-34285555,34285661-34285789,34285887-34285976,
34286116-34286250,34286939-34286984,34287119-34287225,
34287355-34287412,34287524-34287765
Length = 371
Score = 56.0 bits (129), Expect = 2e-08
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Frame = +2
Query: 80 DKY-SILLPTYNERENLPIIIWLIIKYLDE-SLVD----YEVIIIDDGSPDGTSEVARQL 241
+KY S+++P YNE LP + + YL + S V+ YEV+I+DDGS D TS+VA +
Sbjct: 111 EKYISLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYEVLIVDDGSTDHTSKVAFEF 170
Query: 242 QKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDAD 367
+ + + + G G A G+ + G ++++DAD
Sbjct: 171 VRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLMLDAD 212
>04_04_0886 -
29089083-29089211,29089702-29089890,29089968-29090121,
29090389-29090489,29090970-29091020,29092606-29092761
Length = 259
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 35 VVVDSMEVDSGLIKRDKYSILLPTYNERENLPIIIWLIIKYLDESLVDYEV 187
V VDS D+G K+D S T NE N P I +++KY+ L E+
Sbjct: 181 VPVDSSSADNGESKKDSNSRASTTSNESLNHPSNIHIVMKYVASLLEISEI 231
>05_03_0553 - 15389376-15389499,15391167-15391576
Length = 177
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = -2
Query: 526 LSQKVSSPRYELTLEVPAVDSTTPLVTSTRDNIVIIF*LEFNELWNELWMMAQIRIHYNN 347
L Q+V SP E + + + +PL+ S + F L N++W +LW++AQ + HY +
Sbjct: 39 LQQQVLSPYNEFVRQQYGI-TASPLLQS------VAFQLRNNQVWQQLWLVAQ-QSHYED 90
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 347 IIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYG 475
+I D DL HH F P LQ + S Y G +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Frame = +2
Query: 92 ILLPTYNERENLPIIIWLIIKYLDESLVDYEVIIIDDGSPDGTSEVARQ--LQKLYGSSK 265
+ +P NE+E I + LD ++ V ++DD T + R+ L+ ++
Sbjct: 247 VQIPMCNEKEVYQQSIAAVCN-LDWPRSNFLVQVLDDSDDPTTQTLIREEVLKWQQNGAR 305
Query: 266 IVLRPREMKLGLGTAYIHGIQQASG----NFIIIMDADLSHHPKFI 391
IV R R ++ G + S F+ I DAD +P F+
Sbjct: 306 IVYRHRVLRDGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPNPDFL 351
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 331 LLYPMNVGSSESKLHLARSKHYFRGAIELLQLT 233
+L P V + + LHL++S YFR +E +++T
Sbjct: 637 ILSPFIVAQASTVLHLSKSNLYFRPDLERIRIT 669
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 355 YNNKISRSLLYPMNVGSSESKLHLARSKHYFRGAI 251
YNN + L + + ++ LH+ ++++FRGAI
Sbjct: 449 YNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAI 483
>08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -2
Query: 649 NHFHLKDISFRNATQNKLLENFLFVQSK*ASQI*NTRSQH*LSQKVSSPRY 497
N FH +++R QN++L+ F V S + QH ++VSSP++
Sbjct: 1071 NSFHECQLAYRKDIQNEILDKFEIVNRYSPSHMSPLFEQH---EEVSSPQF 1118
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 281 REMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDI 433
R+ K ++H AS +I I D DL E+IKL KY +I
Sbjct: 192 RQAKWWYAKRFLHPDIVASYEYIFIWDEDLGVEHFNAEEYIKLVKKYQLEI 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,677
Number of Sequences: 37544
Number of extensions: 323164
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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