Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0093
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical ...   281   4e-76
AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z22179-6|CAA80163.2|  165|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z71259-6|CAA95792.1|  328|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA hai...    28   6.7  
U58757-14|AAZ82850.1|  233|Caenorhabditis elegans Hypothetical p...    28   6.7  
AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone stem-...    28   6.7  

>AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical
           protein Y66H1A.2 protein.
          Length = 239

 Score =  281 bits (688), Expect = 4e-76
 Identities = 133/189 (70%), Positives = 151/189 (79%)
 Frame = +2

Query: 83  KYSILLPTYNERENLPIIIWLIIKYLDESLVDYEVIIIDDGSPDGTSEVARQLQKLYGSS 262
           KYSI+LPTYNE+ENLPI IWLI  YL E  V +EVII+DD SPDGT  +A+ LQK YG  
Sbjct: 6   KYSIILPTYNEKENLPICIWLIENYLKE--VSHEVIIVDDASPDGTQGIAKLLQKEYGDD 63

Query: 263 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 442
           KI+++PR  KLGLGTAY HG+  A G FII+MDADLSHHPKFIPE I LQ KY  DIV+G
Sbjct: 64  KILIKPRVGKLGLGTAYSHGLSFARGEFIILMDADLSHHPKFIPEMIALQHKYKLDIVTG 123

Query: 443 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSK 622
           TRYK  GGV GWD KRK IS+GANFL Q +L PGVSDLTGSFRLYK+++L KLI   VSK
Sbjct: 124 TRYKDGGGVSGWDLKRKTISKGANFLAQFLLNPGVSDLTGSFRLYKRDILSKLIAESVSK 183

Query: 623 GYVFQMEMI 649
           GYVFQMEM+
Sbjct: 184 GYVFQMEMM 192


>AF125965-1|AAL38962.1|  339|Caenorhabditis elegans Hypothetical
           protein H43I07.3 protein.
          Length = 339

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
 Frame = +2

Query: 89  SILLPTYNERENLPIIIWLIIKYLD-----ESLVDYEVIIIDDGSPDGTSEVARQLQKLY 253
           S+++P  NE E + I++     YL+     +    YE+I++DDGS D T+++  Q+    
Sbjct: 84  SVIIPAMNEVERIEIMLDDCCDYLEARAEKDKDFTYEIIVVDDGSTDETADIVVQI---- 139

Query: 254 GSSKIVLRPREMKL--GLGTAYIHGIQQASGNFIIIMDAD 367
           G+ +  LR  +MK   G G A   G+  +SG  I+  DAD
Sbjct: 140 GARRQNLRVLKMKANRGKGGAVKMGVLHSSGKLILFADAD 179


>Z22179-6|CAA80163.2|  165|Caenorhabditis elegans Hypothetical
           protein F58A4.6 protein.
          Length = 165

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 388 ELWMMAQIRIHYNNKISRSLLYPMNVGSSESKLHLA---RSKHYFRGAIELLQL 236
           E +  AQIR  YN  + + LL  + V +    L  A   R KH+FR  ++L +L
Sbjct: 39  EEYSFAQIRAFYNIPVDKKLLVNIQVKNPAQNLDYAWERRLKHHFRYMLDLEKL 92


>Z75537-2|CAA99835.1|  622|Caenorhabditis elegans Hypothetical
           protein F18E2.2 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 542 GVSDLTGSFRLYKKEVLEKLILSCVSK 622
           G+ ++ G F  YKKEVL+ L  + VSK
Sbjct: 595 GIDEIDGDFEDYKKEVLDALGEALVSK 621


>Z71259-6|CAA95792.1|  328|Caenorhabditis elegans Hypothetical
           protein F13G3.6 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +2

Query: 182 EVIIIDDGSPDGTSEVARQLQKLYGSS--KIVLRPREMKLGLGTAYIHGIQQASGNFIII 355
           E+ + DDGS D T  +    +  +      +V+       G+G A    ++ + G ++  
Sbjct: 40  EICLADDGSVDDTVRILENARLEFEEMGMNVVVTHVPQPGGVGAAKDCAVRSSKGRYLCF 99

Query: 356 MDADLSHHPKFIPEFIKLQLK 418
            DAD    P  I   ++L  K
Sbjct: 100 NDADDVSSPNRIKSQLELATK 120


>Z46794-1|CAA86782.1|  367|Caenorhabditis elegans Hypothetical
           protein R06F6.1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 316 SWDTA-SFWKFYYYNGCGFEPSSKVHS 393
           SWDT    WK   Y  CG EPS  V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285


>Y10114-1|CAA71200.1|  367|Caenorhabditis elegans histone RNA
           hairpin-binding protein protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 316 SWDTA-SFWKFYYYNGCGFEPSSKVHS 393
           SWDT    WK   Y  CG EPS  V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285


>U58757-14|AAZ82850.1|  233|Caenorhabditis elegans Hypothetical
           protein C01B10.11 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +2

Query: 38  VVDSMEVDSGLIKRDKYSILLPTYNERENLPIIIWLIIKYLDESLVDYEVIIIDDGSPDG 217
           + DS   D+G I  D+   +  TY+  + LP +I    K +  +  D++ +   D +  G
Sbjct: 134 LTDSWRDDAGFIVTDRNVYIQGTYDVSKLLPTLIPSTQKMISYTKTDFDSVADFDSTVCG 193

Query: 218 TSEVARQLQKLYGSSKIVL 274
               A     L  SS I+L
Sbjct: 194 FPRDAYLTLLLSSSSTILL 212


>AB060649-1|BAB83255.1|  367|Caenorhabditis elegans histone
           stem-loop binding proteinCDL-1 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 316 SWDTA-SFWKFYYYNGCGFEPSSKVHS 393
           SWDT    WK   Y  CG EPS  V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,695
Number of Sequences: 27780
Number of extensions: 280887
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)