Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0093
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.9  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   7.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +3

Query: 468 STAGTSSVSSYLG-ELT 515
           S+AGTSS++ Y G ELT
Sbjct: 786 SSAGTSSITKYTGCELT 802


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = +3

Query: 468 STAGTSSVSSYLG-ELT 515
           S+AGTSS++ Y G ELT
Sbjct: 876 SSAGTSSITKYTGCELT 892


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 EVIIIDDGSPDGTSEVARQLQKL 250
           + II+ D  P+G    A +LQK+
Sbjct: 98  KTIILSDKGPEGIQINATELQKI 120


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 EVIIIDDGSPDGTSEVARQLQKL 250
           + +I+ D  P+G    A +LQK+
Sbjct: 98  KTVILSDKGPEGIQINATELQKI 120


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 EVIIIDDGSPDGTSEVARQLQKL 250
           + +I+ D  P+G    A +LQK+
Sbjct: 98  KTVILSDKGPEGIQINATELQKI 120


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 182 EVIIIDDGSPDGTSEVARQLQKL 250
           + +I+ D  P+G    A +LQK+
Sbjct: 98  KTVILSDKGPEGIQINATELQKI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,523
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)