Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0091
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   4.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   6.5  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.6  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 234 CGCAKVSGTRRARG 193
           C CA  +GTRRA G
Sbjct: 920 CVCAGSTGTRRATG 933


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 343 TSALQYL*VKRWTCMSRETRILVYLS*RLWPRTSPGFPWQRRLYSRRSSRGNTTRASRKR 522
           ++A+  +  +RW  + RE +   Y    L  R         +LY   SSR N TR  +++
Sbjct: 506 SAAINQILGRRWHALGREEQAKYY---ELARRERQ---LHMQLYPDWSSRANATRGKKRK 559

Query: 523 SSTMP 537
               P
Sbjct: 560 RKQDP 564


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +1

Query: 343 TSALQYL*VKRWTCMSRETRILVYLS*RLWPRTSPGFPWQRRLYSRRSSRGNTTRASRKR 522
           ++A+  +  +RW  + RE +   Y    L  R         +LY   SSR N TR  +++
Sbjct: 398 SAAINQILGRRWHALGREEQAKYY---ELARRERQ---LHMQLYPDWSSRANATRGKKRK 451

Query: 523 SSTMP 537
               P
Sbjct: 452 RKQDP 456


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 328 PLASSLGGYGVTQVTS*PASSNASTIPLP 242
           P++ S+GG+G     S    + +ST P P
Sbjct: 46  PVSFSMGGHGSLLSPSGNTPNKSSTSPYP 74


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 407 WCIFREGFGREHHQGFP 457
           W I+R G GR   +  P
Sbjct: 31  WAIYRPGIGRYAQEDLP 47


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 557 YCPVTSFGIVEERF 516
           YCP+ + GI++ +F
Sbjct: 161 YCPIVTTGIIKIQF 174


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 83  YLKICYIKIVH*NCSDNHEVSR 148
           + K+C +KIV     D  E++R
Sbjct: 364 FFKLCGMKIVKKRRKDKREITR 385


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 267 LEAGHEVTWVTPYPPSELAKGLKIVDVS 350
           LE  H +    P PP  L     I+D+S
Sbjct: 257 LETFHTLEKCRPDPPQNLVINESIIDLS 284


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 555 VLQVPWILMSTIAMMPQL 608
           +LQV WI++  I +M Q+
Sbjct: 303 LLQVAWIVLHLIRLMYQV 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,493
Number of Sequences: 336
Number of extensions: 3055
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)