Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0091
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    29   0.56 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    27   2.3  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    27   3.0  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   5.2  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    25   6.9  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   9.1  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   9.1  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 467 RRCQGNPGDVLGQSLHERYTSIRVSLLMHVHRFTYRYCSADVDYLQTFGQFARRIR 300
           +RC G   D     L+ + +S  +SL + ++   +   + D DY+Q  G   +R+R
Sbjct: 415 KRCFGKTNDGSNPCLYHKESSA-ISLFLRLYAIAFS--NTDADYIQDSGPLFKRVR 467


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 481 ACCRAG-VARETLVMFSAKAFTKDTPVFEFLCSCMSTVL 368
           +C  +G V+R+  ++ + +  T+DT   E LCS  ST+L
Sbjct: 290 SCSGSGIVSRQDYLLGNEQDVTEDTERLENLCSFQSTIL 328


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 173 GDVGAC-VPRALRVPDTFAQPQLPRQRDSRR 262
           GD G   V   L  P    QPQLP++ DS+R
Sbjct: 316 GDTGTSKVVLNLNDPKLLLQPQLPKKEDSQR 346


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 279 HEVTWVTPYPPSELAKGLKIVDVSATVSISKTVDMHEQRNSNTG 410
           HE  W    PP E++K LKI+ +     ISK  D  + +N ++G
Sbjct: 113 HESYWE---PPLEISKDLKILRLPIRKQISK--DSSQSQNVDSG 151


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 207 RRARGTHAPTSPRTPRRKAV-RDTS*LSEQFQC 112
           RR R  + PTS    R KAV +D   + + FQC
Sbjct: 240 RRGRAPNNPTSDSISRSKAVPKDRINMYQPFQC 272


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 507 PRRISPGRSPAVEPALPGKPW*CSRPKPSR 418
           PRR +P RS +   ALP +      P PSR
Sbjct: 11  PRRAAPARSASTAAALPPRTM-APPPAPSR 39


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = -2

Query: 425 LHERYTSIRVSLLMHVHRFTYRYCSAD 345
           +  +++    SL++H+H+F +R+   D
Sbjct: 57  IEHKFSKEEPSLILHIHKFHFRFEQQD 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,522
Number of Sequences: 5004
Number of extensions: 52042
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)