Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0091
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302... 33 0.19
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 29 3.1
12_02_0476 + 19493278-19493349,19493595-19494209,19494352-194945... 29 4.1
03_03_0204 + 15436660-15437244,15437355-15437632,15438792-154390... 29 4.1
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175... 29 4.1
08_02_0076 + 11967606-11967905,11969125-11969223,11969813-119741... 28 7.1
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827... 28 7.1
02_02_0326 - 8976913-8976963,8977453-8977521,8978247-8978438,897... 28 7.1
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 28 7.1
08_01_0059 - 394001-394708 27 9.4
07_03_1310 - 25673140-25673418,25673837-25674082,25674189-256744... 27 9.4
>03_01_0389 +
3021849-3022136,3022237-3022753,3022835-3022988,
3023076-3023166,3024556-3024627,3026366-3026689
Length = 481
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 431 GREHHQGFPGN---AGSTAGDRPGEIRRGHHGNVLQ 529
G+EHH GF G G G PG +RGHH + ++
Sbjct: 199 GQEHHGGFDGQRRGGGRRDGHGPGHQQRGHHPSYIR 234
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = +3
Query: 252 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 419
++ A+ AG VTWVT K GLK ++ + D+HEQ S+ G
Sbjct: 371 LIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSFDRILAEVRAFFDVHEQEGSHPGGVH 430
Query: 420 VKALAENIT 446
++ +N+T
Sbjct: 431 LEMTGQNVT 439
>12_02_0476 +
19493278-19493349,19493595-19494209,19494352-19494519,
19494677-19494868,19495604-19495672,19496461-19496544
Length = 399
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 309 PSELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATP---ALQQ 479
PSE AK KI + T+S ++ H G + ++ LA+ +V L P +L++
Sbjct: 299 PSETAKNFKIDGHAGTISFITSMTQH----FCAGCNRLRLLADGNLKVCLFGPSEVSLRE 354
Query: 480 AIVQGKYDAGITE 518
I G DAG+ E
Sbjct: 355 PIRAGVDDAGLRE 367
>03_03_0204 +
15436660-15437244,15437355-15437632,15438792-15439068,
15439160-15439405,15440853-15441134
Length = 555
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 252 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 419
++ A+ AG VTW+T K GLK + ++ + D+H+Q S+ G
Sbjct: 424 LIRAVRHAGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGVH 483
Query: 420 VKALAENIT 446
++ +N+T
Sbjct: 484 LEMTGQNVT 492
>02_05_0429 -
28916583-28916882,28917286-28917408,28917484-28917561,
28917889-28917950,28918260-28918347
Length = 216
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 267 ATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVR 145
A RRL C G+C C G+ G ++PR RR AVR
Sbjct: 166 ADRRLPDCAGACPCRASFGSPCGAG-GVVSAPRHRRRMAVR 205
>08_02_0076 +
11967606-11967905,11969125-11969223,11969813-11974124,
11974177-11974211
Length = 1581
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/23 (43%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +2
Query: 392 EKLEYWCIFRE-GFGREHHQGFP 457
+K ++WC+F+E FG E+++G P
Sbjct: 424 KKDDFWCLFKECVFGHENYKGEP 446
>02_05_0684 -
30880527-30880753,30881952-30882124,30882687-30882754,
30882860-30882973,30883281-30883438,30883516-30883654,
30883851-30883907,30884064-30884140,30884324-30884462,
30884590-30884668,30885047-30885174,30885269-30885352,
30886072-30886191,30886274-30886375,30886470-30886617,
30887404-30887749,30887851-30887968,30888309-30888370,
30888798-30888947,30889049-30889169,30889269-30889319,
30889427-30889567
Length = 933
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 278 SRGDLGDSVSSERTGQRSEDSRRQRYSIYK*NGGHA 385
S G + S S T RS DSR +RY NGG++
Sbjct: 880 SNGSVDRSSSHNETRSRSADSRGKRYENGDVNGGNS 915
>02_02_0326 -
8976913-8976963,8977453-8977521,8978247-8978438,
8978597-8978764,8978902-8979513,8979765-8979815
Length = 380
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 309 PSELAKGLKIVDVSATVSISKTVDMHEQRNSNTGVSFVKALAENITRVSLATP---ALQQ 479
PSE AK KI + T+S ++ H G + ++ LA+ +V L P +L++
Sbjct: 291 PSETAKNFKIDGHAGTISFITSMTEH----FCAGCNRLRLLADGNLKVCLFGPSEVSLRE 346
Query: 480 AIVQGKYDAGITE 518
I G DAG+ E
Sbjct: 347 PIRAGVDDAGLRE 359
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 506 RVVFPLDDRLL*SRRCQGNPGDVLGQSLH 420
RV+FPLDD L G GD G S H
Sbjct: 463 RVIFPLDDGRLGELHLPGMGGDDFGPSQH 491
>08_01_0059 - 394001-394708
Length = 235
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/50 (36%), Positives = 21/50 (42%)
Frame = -1
Query: 522 TFP*CPRRISPGRSPAVEPALPGKPW*CSRPKPSRKIHQYSSFSAHACPP 373
T P PRR P SP + P P P + P PS H + H PP
Sbjct: 16 TPPPPPRRAPPPPSPPIRPPPPPTPRPYAPPPPS---HPLAPPPPHISPP 62
>07_03_1310 -
25673140-25673418,25673837-25674082,25674189-25674465,
25675474-25675751,25675845-25676378
Length = 537
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 252 IVDALLEAGHEVTWVTPYPPSELAK---GLKIVDVSATVS-ISKTVDMHEQRNSNTGVSF 419
++ A+ +G VTW+T K GLK + ++ + D+H+Q S+ G
Sbjct: 407 LIRAVRNSGQIVTWITDPMHGNTIKAPCGLKTRPFDSILAEVRAFFDVHDQEGSHPGGIH 466
Query: 420 VKALAENIT 446
++ +N+T
Sbjct: 467 LEMTGQNVT 475
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,310,889
Number of Sequences: 37544
Number of extensions: 393711
Number of successful extensions: 1463
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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