Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0091
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M74002-1|AAA35554.1|  484|Homo sapiens arginine-rich nuclear pro...    33   1.1  
BX641004-1|CAE46007.1|  332|Homo sapiens hypothetical protein pr...    33   1.1  
BC040436-1|AAH40436.1|  483|Homo sapiens splicing factor, argini...    33   1.1  
AL353771-7|CAI22336.1|  424|Homo sapiens splicing factor, argini...    33   1.1  
AL353771-6|CAI22335.1|  484|Homo sapiens splicing factor, argini...    33   1.1  
AL353771-5|CAI22334.1|  483|Homo sapiens splicing factor, argini...    33   1.1  
BC017359-1|AAH17359.1|  394|Homo sapiens SFRS11 protein protein.       31   3.4  
AL353771-4|CAI22333.1|  389|Homo sapiens splicing factor, argini...    31   3.4  
U47677-1|AAC50719.1|  437|Homo sapiens transcription factor E2F1...    31   4.5  
S49592-1|AAB24289.1|  476|Homo sapiens transcription factor E2F ...    31   4.5  
M96577-1|AAA35782.1|  437|Homo sapiens E2F-1 protein.                  31   4.5  
BC127744-1|AAI27745.1|  272|Homo sapiens hypothetical gene suppo...    31   4.5  
BC127743-1|AAI27744.1|  272|Homo sapiens hypothetical gene suppo...    31   4.5  
BC058902-1|AAH58902.1|  437|Homo sapiens E2F transcription facto...    31   4.5  
BC050369-1|AAH50369.1|  437|Homo sapiens E2F transcription facto...    31   4.5  
AY324389-1|AAQ86961.1| 1332|Homo sapiens neural interleukin 16 p...    31   4.5  
AL121906-7|CAC08486.1|  437|Homo sapiens E2F transcription facto...    31   4.5  
AK131530-1|BAD18668.1| 1331|Homo sapiens protein ( Homo sapiens ...    31   4.5  
AK124565-1|BAC85888.1| 1163|Homo sapiens protein ( Homo sapiens ...    31   4.5  
AF516106-1|AAM47604.1|  437|Homo sapiens E2F transcription facto...    31   4.5  
BC111761-1|AAI11762.1| 1065|Homo sapiens inversin, isoform a pro...    30   5.9  
AL445214-4|CAI39744.1| 1065|Homo sapiens inversin protein.             30   5.9  
AL356798-2|CAI40807.1| 1065|Homo sapiens inversin protein.             30   5.9  
AL137072-3|CAH72173.1| 1065|Homo sapiens inversin protein.             30   5.9  
AF084382-1|AAC79456.1| 1065|Homo sapiens inversin protein protein.     30   5.9  
AF084367-1|AAC79436.1| 1065|Homo sapiens inversin protein protein.     30   5.9  
AF039217-1|AAD02131.2| 1013|Homo sapiens inv candidate homolog p...    30   5.9  
AK092577-1|BAC03917.1|  142|Homo sapiens oA ligase form XL-III. ...    30   7.8  

>M74002-1|AAA35554.1|  484|Homo sapiens arginine-rich nuclear
           protein protein.
          Length = 484

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 315 RSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAVRDT 139
           + ED E  RS +  P++    S  R S   ++    RR+R GT +P  PR+P+RK  R  
Sbjct: 314 KKEDKEKKRS-KTPPKS---YSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSP 369

Query: 138 S 136
           S
Sbjct: 370 S 370


>BX641004-1|CAE46007.1|  332|Homo sapiens hypothetical protein
           protein.
          Length = 332

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 315 RSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAVRDT 139
           + ED E  RS +  P++    S  R S   ++    RR+R GT +P  PR+P+RK  R  
Sbjct: 162 KKEDKEKKRS-KTPPKS---YSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSP 217

Query: 138 S 136
           S
Sbjct: 218 S 218


>BC040436-1|AAH40436.1|  483|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 483

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 315 RSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAVRDT 139
           + ED E  RS +  P++    S  R S   ++    RR+R GT +P  PR+P+RK  R  
Sbjct: 314 KKEDKEKKRS-KTPPKS---YSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSP 369

Query: 138 S 136
           S
Sbjct: 370 S 370


>AL353771-7|CAI22336.1|  424|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 424

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 315 RSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAVRDT 139
           + ED E  RS +  P++    S  R S   ++    RR+R GT +P  PR+P+RK  R  
Sbjct: 254 KKEDKEKKRS-KTPPKS---YSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSP 309

Query: 138 S 136
           S
Sbjct: 310 S 310


>AL353771-6|CAI22335.1|  484|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 484

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 315 RSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAVRDT 139
           + ED E  RS +  P++    S  R S   ++    RR+R GT +P  PR+P+RK  R  
Sbjct: 314 KKEDKEKKRS-KTPPKS---YSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSP 369

Query: 138 S 136
           S
Sbjct: 370 S 370


>AL353771-5|CAI22334.1|  483|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 483

 Score = 32.7 bits (71), Expect = 1.1
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 315 RSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAVRDT 139
           + ED E  RS +  P++    S  R S   ++    RR+R GT +P  PR+P+RK  R  
Sbjct: 314 KKEDKEKKRS-KTPPKS---YSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSP 369

Query: 138 S 136
           S
Sbjct: 370 S 370


>BC017359-1|AAH17359.1|  394|Homo sapiens SFRS11 protein protein.
          Length = 394

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 315 RSEDTESPRS---PRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAV 148
           + ED E  RS   P+    A R  S        ++    RR+R GT +P  PR+P+RK  
Sbjct: 314 KKEDKEKKRSKTPPKSYSTARRSRSASSLHICDSRERRRRRSRSGTRSPKKPRSPKRKLS 373

Query: 147 RDTS 136
           R  S
Sbjct: 374 RSPS 377


>AL353771-4|CAI22333.1|  389|Homo sapiens splicing factor,
           arginine/serine-rich 11 protein.
          Length = 389

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -1

Query: 315 RSEDTESPRS---PRDQPQATRRLSLCRGSCGCAKVSGTRRAR-GTHAPTSPRTPRRKAV 148
           + ED E  RS   P+    A R  S        ++    RR+R GT +P  PR+P+RK  
Sbjct: 314 KKEDKEKKRSKTPPKSYSTARRSRSASSLHICDSRERRRRRSRSGTRSPKKPRSPKRKLS 373

Query: 147 RDTS 136
           R  S
Sbjct: 374 RSPS 377


>U47677-1|AAC50719.1|  437|Homo sapiens transcription factor E2F1
           protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 78  APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 131


>S49592-1|AAB24289.1|  476|Homo sapiens transcription factor E2F
           like protein protein.
          Length = 476

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 117 APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 170


>M96577-1|AAA35782.1|  437|Homo sapiens E2F-1 protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 78  APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 131


>BC127744-1|AAI27745.1|  272|Homo sapiens hypothetical gene
           supported by AK125122 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 319 SSLGGYGVTQVTS*PASSNASTIPLPRELWLREGIGNTQSTWYARADVTTHTKKKSSPRH 140
           SSLG  GVT++     +  AS      E WL +     Q T + R D      +K +PR 
Sbjct: 72  SSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQET-FPRLDPPPPITRKRTPRA 130

Query: 139 L 137
           L
Sbjct: 131 L 131


>BC127743-1|AAI27744.1|  272|Homo sapiens hypothetical gene
           supported by AK125122 protein.
          Length = 272

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -3

Query: 319 SSLGGYGVTQVTS*PASSNASTIPLPRELWLREGIGNTQSTWYARADVTTHTKKKSSPRH 140
           SSLG  GVT++     +  AS      E WL +     Q T + R D      +K +PR 
Sbjct: 72  SSLGSVGVTEINKTAGAQLASGTDAAPEAWLEDERSVLQET-FPRLDPPPPITRKRTPRA 130

Query: 139 L 137
           L
Sbjct: 131 L 131


>BC058902-1|AAH58902.1|  437|Homo sapiens E2F transcription factor 1
           protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 78  APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 131


>BC050369-1|AAH50369.1|  437|Homo sapiens E2F transcription factor 1
           protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 78  APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 131


>AY324389-1|AAQ86961.1| 1332|Homo sapiens neural interleukin 16
           precursor protein protein.
          Length = 1332

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 241 RELWLREGIGNTQSTWYARADVTTHTKKKSSPRH 140
           R  W  EG+   +S+W+ R  +    +K S+P H
Sbjct: 467 RHQWSLEGVKRLESSWHGRPTLEKEREKNSAPPH 500


>AL121906-7|CAC08486.1|  437|Homo sapiens E2F transcription factor 1
           protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 78  APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 131


>AK131530-1|BAD18668.1| 1331|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16759 fis, clone BRACE3046450, highly  similar
           to Interleukin-16 precursor. ).
          Length = 1331

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 241 RELWLREGIGNTQSTWYARADVTTHTKKKSSPRH 140
           R  W  EG+   +S+W+ R  +    +K S+P H
Sbjct: 467 RHQWSLEGVKRLESSWHGRPTLEKEREKNSAPPH 500


>AK124565-1|BAC85888.1| 1163|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42574 fis, clone BRACE3008137, highly  similar
           to Interleukin-16 precursor. ).
          Length = 1163

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 241 RELWLREGIGNTQSTWYARADVTTHTKKKSSPRH 140
           R  W  EG+   +S+W+ R  +    +K S+P H
Sbjct: 299 RHQWSLEGVKRLESSWHGRPTLEKEREKNSAPPH 332


>AF516106-1|AAM47604.1|  437|Homo sapiens E2F transcription factor 1
           protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 297 SPRSPRDQPQATRRLSLCRGSCGCAKVSGTRRARGTHAPTSPRTPRRKAVRDTS 136
           +PR    +P   RRL L       A+ SG  R RG H     ++P  K+  +TS
Sbjct: 78  APRPALGRPPVKRRLDLETDHQYLAESSGPARGRGRHPGKGVKSPGEKSRYETS 131


>BC111761-1|AAI11762.1| 1065|Homo sapiens inversin, isoform a
           protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 776 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 833

Query: 156 KAVR 145
           K  +
Sbjct: 834 KVTQ 837


>AL445214-4|CAI39744.1| 1065|Homo sapiens inversin protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 776 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 833

Query: 156 KAVR 145
           K  +
Sbjct: 834 KVTQ 837


>AL356798-2|CAI40807.1| 1065|Homo sapiens inversin protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 776 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 833

Query: 156 KAVR 145
           K  +
Sbjct: 834 KVTQ 837


>AL137072-3|CAH72173.1| 1065|Homo sapiens inversin protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 776 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 833

Query: 156 KAVR 145
           K  +
Sbjct: 834 KVTQ 837


>AF084382-1|AAC79456.1| 1065|Homo sapiens inversin protein protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 776 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 833

Query: 156 KAVR 145
           K  +
Sbjct: 834 KVTQ 837


>AF084367-1|AAC79436.1| 1065|Homo sapiens inversin protein protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 776 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 833

Query: 156 KAVR 145
           K  +
Sbjct: 834 KVTQ 837


>AF039217-1|AAD02131.2| 1013|Homo sapiens inv candidate homolog
           protein.
          Length = 1013

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -1

Query: 321 PVRSEDTESPRSPRDQPQATRRLSLCRGSCGCAKVS--GTRRARGTHAPTSP---RTPRR 157
           P R  DTE P++ +  PQ  R   L  G C  A  S  G+ R    HA  +P   RTPR 
Sbjct: 724 PSRRHDTE-PKA-KCAPQKRRTQELRGGRCSPAGSSRPGSARGEAVHAGQNPPHHRTPRN 781

Query: 156 KAVR 145
           K  +
Sbjct: 782 KVTQ 785


>AK092577-1|BAC03917.1|  142|Homo sapiens oA ligase form XL-III.
           protein.
          Length = 142

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
 Frame = -1

Query: 324 WPVRSEDTESPRSPRDQPQATRRLSLCRGS---CGCAKVSGTRRARGTHAPTSPRTPRRK 154
           WP  S   E    PR+ P + R   LC  +    G  + S      G   PTS  T R +
Sbjct: 52  WPAGSWAAEGHWPPREAPSSGRGQGLCGSASWLAGATRGSWASATTGAGRPTSAPTRRTR 111

Query: 153 A 151
           A
Sbjct: 112 A 112


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,080,610
Number of Sequences: 237096
Number of extensions: 2081586
Number of successful extensions: 13497
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 13010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13493
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)