Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0091
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.61 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.3  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   9.9  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 275 WSRGDLGDSVSSERTGQRSEDSRRQRYSIYK*NGGHA*AEKLEYWCIFREGFGREHHQ-- 448
           W  G  GD +SSE     ++ S  ++  I K + G      + +W  F + + ++ +   
Sbjct: 187 WGEGSSGDDLSSEWDSDYTDKSNEKK--IPK-SSGWRKLRNIVHWTPFFQTYKKQRYPWV 243

Query: 449 GFPGNAGS-TAGDRPGEI 499
              G+ G+  AG  PG I
Sbjct: 244 QLAGHQGNFRAGPTPGTI 261


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 455 PGNAGSTAGDRPGEIRRGHHGNVL 526
           PGN   +  + PG    G H N+L
Sbjct: 60  PGNFSPSGPNSPGSFTAGCHSNLL 83


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 455 PGNAGSTAGDRPGEIRRGHHGNVL 526
           PGN   +  + PG    G H N+L
Sbjct: 60  PGNFSPSGPNSPGSFTAGCHSNLL 83


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 572 PGHLKYCPVTSFGIVEERFR 513
           PG++ Y   T+ G + E+FR
Sbjct: 544 PGYMIYIWFTTSGTISEKFR 563


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 572 PGHLKYCPVTSFGIVEERFR 513
           PG++ Y   T+ G + E+FR
Sbjct: 597 PGYMIYIWFTTSGTISEKFR 616


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 510 ITETFFNDAEAGYGAVLQVPWILMSTIAMMPQLE 611
           +T    +  E+G+   L   WIL S +    QLE
Sbjct: 779 VTLAILDFHESGFMESLDNHWILRSNVQQCEQLE 812


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 531 DAEAGYGAVLQV 566
           D EAG GAVL+V
Sbjct: 40  DPEAGIGAVLKV 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,604
Number of Sequences: 438
Number of extensions: 4319
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)