Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0090
         (747 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.1  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   1.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   3.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.4  
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      22   6.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.9  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 464 ARADGLPLEAPPPPQDRSH 520
           A A  LPL  PPPP   +H
Sbjct: 153 AAATSLPLHYPPPPPVYTH 171


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 VDYEGTIFVNTKIDDDYVGF 233
           +DYE T+ +N  I   Y+G+
Sbjct: 633 MDYEHTVKINENISMPYIGY 652



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 632 DHFLGEAEHSKSPPLQGEVVSVPRVRDQAVVLVHLQSDETDLGAVEELPAVGRLL 468
           D F+  +E    P +   V S+  + D+A   VH  +       V   P  GRL+
Sbjct: 358 DAFIRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPPKVYPTPYGGRLV 412


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 632 DHFLGEAEHSKSPPLQGEVVSVPRVRDQAVVLVHLQSDETDLGAVEELPAVGRLL 468
           D F+  +E    P +   V S+  + D+A   VH  +       V   P  GRL+
Sbjct: 44  DAFIRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPPKVYPTPYGGRLV 98


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 632 DHFLGEAEHSKSPPLQGEVVSVPRVRDQAVVLVHLQSDETDLGAVEELPAVGRLL 468
           D F+  +E    P +   V S+  + D+A   VH  +       V   P  GRL+
Sbjct: 591 DAFIRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPPKVYPTPYGGRLV 645



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 VDYEGTIFVNTKIDDDYVGF 233
           +DYE T+ +N  I   Y+G+
Sbjct: 866 MDYEHTVKINENISMLYIGY 885


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 632 DHFLGEAEHSKSPPLQGEVVSVPRVRDQAVVLVHLQSDETDLGAVEELPAVGRLL 468
           D F+  +E    P +   V S+  + D+A   VH  +       V   P  GRL+
Sbjct: 591 DAFIRTSEDDNDPHVNEYVESLASIIDEAATKVHGTTVRVRPPKVYPTPYGGRLV 645



 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 174 VDYEGTIFVNTKIDDDYVGF 233
           +DYE T+ +N  I   Y+G+
Sbjct: 866 MDYEHTVKINENISMLYIGY 885


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 266 IKPLVALVSKNKSNIIVVYLCVD 198
           +KPL++LV+  K  I +  +C+D
Sbjct: 1   MKPLLSLVTLWKLTIFLSSMCLD 23


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 272 DHIKPLVALVSKN 234
           +H+ P+VALV KN
Sbjct: 161 EHLYPVVALVVKN 173


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 615  FSQEMIIWSNLLY 653
            FS E I+W +L+Y
Sbjct: 985  FSSEKIVWLHLVY 997


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,589
Number of Sequences: 336
Number of extensions: 4318
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)