Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0090
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    31   0.13 
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    28   1.6  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    28   1.6  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    28   1.6  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    27   3.8  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    26   5.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   5.0  
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    26   6.6  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    26   6.6  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   8.7  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   8.7  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 434 ALERPSQRGLARADGLPLEAPPPPQDRSHQTEDVREQPPGRGL 562
           A+  P+    A   G P + PPPPQ +SH    V    P R +
Sbjct: 92  AIPNPANGYAAVYGGPPSQLPPPPQPQSHPNVTVISASPARAI 134


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
 Frame = +3

Query: 270 VMWKKDKQTYWQKTPFRAV---AENGIQLKLVNSK---TGPGKILRNALWNTNST 416
           V+WK+  +T ++  P+R +   A NG+ ++LV SK   T   K + N    +N+T
Sbjct: 350 VVWKESTRTVFETVPWRILSSQATNGL-IELVRSKTRLTSKNKTVSNVYDESNAT 403


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 224 IIVVYLCVDEDGPLVVDSAEAVESDRQTR 138
           +++ +LCVD+ G +V DS++ V  D + +
Sbjct: 219 LLMNHLCVDQHGRIVFDSSDTVIKDLENK 247


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +3

Query: 492  LLHRPKIGLIRLKMYENNRLVADSGNTYDFTLKGGRLGVFCFSQEMII 635
            ++ RP  GL  +K+  NN L  D+GN    TL+  ++G    ++E+++
Sbjct: 962  IMLRPYNGL-EVKLNANNNLEIDTGNIPSLTLR-RQIGFLTMTEELLL 1007


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -2

Query: 596 PPLQGEVVSVPRVRDQAVVLVHLQSDETDLG-AVEELPAVGRL--LAPAHVARVFPEQSH 426
           P LQ  + + P    +     ++QSDE D+G    EL   GRL  ++      +F +  H
Sbjct: 563 PILQEFLDATPTAELEPTTESYVQSDEADMGMTYAELSVFGRLRKISKCGPYSMFTQLMH 622

Query: 425 LIRSRVSVPESVPEYLPR 372
               R+S P  V E + R
Sbjct: 623 QWGDRLS-PSQVAEKVKR 639


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 441 KDPRNVGWREQTAYRWK-LLHRPKIGLI 521
           +D  + GW+ QTA+ W  LLH  K+G++
Sbjct: 286 RDLWSCGWK-QTAFPWSNLLHHIKLGML 312


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 413 YSGSGDFALERPSQRGLARADGLPLEAPPPPQDRSHQTEDVREQP-PGRGL 562
           YS     + E P      +AD LP   PPPP     Q+ +  + P P R +
Sbjct: 213 YSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNV 263


>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 336 GIQLKLVNSKTGPGKILRNALWNTNSTPDQVT 431
           GI+L +VN K  P K  +  L+   S+P  +T
Sbjct: 137 GIELLIVNEKIIPQKTQKYLLYELFSSPSSIT 168


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/65 (30%), Positives = 26/65 (40%)
 Frame = +2

Query: 416 SGSGDFALERPSQRGLARADGLPLEAPPPPQDRSHQTEDVREQPPGRGLWEHLRLHPEGG 595
           SG GD  +    Q   AR +G PL   P       +       P G  L  H++ +PEG 
Sbjct: 308 SGPGDAQMPSLFQ---ARLEGSPLTKNPIDLMYGSKFTLKSRNPTGALLHSHVQTYPEGS 364

Query: 596 ETWSV 610
           E   V
Sbjct: 365 EQQQV 369


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 470 ADGLPLEAPPPPQDRSHQTEDVREQPP 550
           A GL +E P PP+  S + ++VR+ PP
Sbjct: 360 AAGL-VEKPEPPRQFSFEFDEVRKLPP 385


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = -2

Query: 584 GEVVSVPRVRDQAVVLVHLQSDETDLGAVEELPAVGRLLAPAHVARVFPEQSHLIRSRVS 405
           G  VS   + ++A  +V   +   D+G     P    +     + RV P  S L  S ++
Sbjct: 434 GGKVSQNNILEKAKSMVGDGASILDIGGQSTKPGADPVSVEEELRRVIPMISLLRSSGIT 493

Query: 404 VPESVPEY 381
           VP S+  Y
Sbjct: 494 VPISIDTY 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,457
Number of Sequences: 5004
Number of extensions: 71102
Number of successful extensions: 234
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)