Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0090
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 31 0.97
09_01_0037 - 604001-604957 26 3.7
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729... 29 5.2
02_05_0100 - 25821606-25822349 29 5.2
01_07_0105 - 41104655-41104851,41105818-41107150 29 5.2
07_03_0147 - 14437982-14438390,14438521-14438576 28 6.9
05_05_0251 + 23616546-23617760 28 6.9
01_06_0922 - 33022709-33023545 28 6.9
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 9.1
04_04_1651 - 35057525-35057680,35058302-35058311,35058429-350585... 28 9.1
03_04_0055 + 16891212-16891848,16893166-16893206 28 9.1
02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-75... 28 9.1
01_01_0194 - 1684427-1684810 28 9.1
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 31.1 bits (67), Expect = 0.97
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = +2
Query: 479 LPLEAPPPPQDRSHQTEDVREQPPGRGLWEHLRLHPEGG 595
LPL APPPP H + E PG L + L P GG
Sbjct: 61 LPLHAPPPPASAEH----LPEPSPGEPLVVDVYLTPSGG 95
>09_01_0037 - 604001-604957
Length = 318
Score = 25.8 bits (54), Expect(2) = 3.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 380 DTQERSLEH*LYSGSGDFALERPSQRGLARADGLPLEAPPPP 505
D+ SL + S L + R +ARA G+ + PPPP
Sbjct: 156 DSSHHSLPSQMPSSPPHLLLPQHVYRPVARAGGVVVPPPPPP 197
Score = 21.8 bits (44), Expect(2) = 3.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 485 LEAPPPPQDRSHQTEDVREQPP 550
L+ PPP Q VR++PP
Sbjct: 230 LQPPPPSQMPPPTPSCVRQEPP 251
>03_02_0306 +
7290086-7290283,7290998-7291154,7291270-7291377,
7291494-7291621,7291733-7291861,7291945-7292012,
7292130-7292361
Length = 339
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 180 YEGTIFVNTKIDDDYVGFIFGYQSNKRFYVVMWKKDKQTYWQKTPF 317
Y+G F++ +I+ D FIF S Y W K K Y Q + +
Sbjct: 292 YDGQGFMSLQINQDQADFIFYDVSGNILY--KWSKSKANYLQPSTY 335
>02_05_0100 - 25821606-25822349
Length = 247
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 494 PPPPQDRSHQTEDVREQPPGRGLWEHLRLHPEGG 595
PPPP Q R+ PP RG H HP+ G
Sbjct: 90 PPPPPHAPFQGYQQRQWPPPRGHPWHEGPHPQHG 123
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 419 GSGDFALERPSQRGLARADGLPLEAPPPPQDRSHQTEDVRE 541
G L R +A A+ P APPPP D S V+E
Sbjct: 21 GRSSRRLFRRKSSVVAAANAAPSHAPPPPSDESSAAAVVKE 61
>07_03_0147 - 14437982-14438390,14438521-14438576
Length = 154
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 482 PLEAPPPPQDRSHQTEDVREQP-PGRGLWEHLRLHPEGGETW 604
PL PP + R H DV +P R E LRLH G+ W
Sbjct: 11 PLTPPPRARWRHHLARDVYHRPFTAREDDELLRLHYRLGDRW 52
>05_05_0251 + 23616546-23617760
Length = 404
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 482 PLEAPPPPQDRSHQTEDVREQPP 550
PL+APPPP+ + + ++ E PP
Sbjct: 270 PLQAPPPPRTSAFKVFEMVEPPP 292
>01_06_0922 - 33022709-33023545
Length = 278
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 443 RPSQRGLARADGLPLEAPPPP 505
RPS R + A PLE PPPP
Sbjct: 212 RPSPRRVQEAPPSPLEPPPPP 232
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 446 PSQRGLARADGLPLEAPPPP 505
P +A A GLPL PPPP
Sbjct: 237 PKPANIAGAPGLPLPPPPPP 256
>04_04_1651 -
35057525-35057680,35058302-35058311,35058429-35058569,
35058675-35058784,35058907-35059006,35059108-35059308,
35059674-35059879,35060504-35060716,35060785-35060923,
35061370-35061606,35061688-35061893,35062664-35062759,
35062900-35063040
Length = 651
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 108 AEILQTLNSDPGLAVGFDSFGGVDYEGTIFVNTKIDDDYVGFIFGYQS 251
A+ Q SD AV D+ + +GT+ T +YV F+F YQS
Sbjct: 369 AQTAQKTFSDFEEAVEKDATKNIHIDGTVHPLTSYVINYVKFLFDYQS 416
>03_04_0055 + 16891212-16891848,16893166-16893206
Length = 225
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +2
Query: 419 GSGDFALERPSQRGLARADGLPLEAPPPPQDRSHQTEDVREQPPGRGLWEHLRLHPEGG 595
G +A G+ G P+ PPP + Q + GRG + H HP GG
Sbjct: 147 GYAGYAAPGAGPGGMMMMMGQPMYGSPPPPPQQQQQQHHHMAMGGRGGFGH---HPGGG 202
>02_01_0102 - 749122-749799,750123-750371,750753-750851,751380-751889,
752025-753905,754093-754296,754807-754899,755036-755122,
755241-755328,755533-755645,755943-757259,757398-758672,
759166-759273
Length = 2233
Score = 27.9 bits (59), Expect = 9.1
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = +2
Query: 329 RERHTAQAGQLEDRPGEDTQERSLEH*LYSGSGDFALERPSQRGLARADGLPLEAPPPPQ 508
R R A +L+DR G+ T + H + G GD+ + S++ A + Q
Sbjct: 1771 RIRPRPNAEKLDDRSGDGTVPQRGVHLAFQGDGDYDSQFKSEQAFA-------DPASRQQ 1823
Query: 509 DRSHQTEDVREQPPGR 556
D H+T + P R
Sbjct: 1824 DTVHRTVKQKRNMPSR 1839
>01_01_0194 - 1684427-1684810
Length = 127
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 443 RPSQRGLARADGLPLEAPPPPQD-RSHQTEDVREQPPGR 556
RPS AD P +APPPPQ H+ PP R
Sbjct: 63 RPSFSWEDFADAPPKQAPPPPQQPADHERVAENATPPRR 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,591,265
Number of Sequences: 37544
Number of extensions: 539353
Number of successful extensions: 2142
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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