Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0090
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical ... 31 1.1
Z83235-1|CAB05775.1| 174|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical p... 30 2.0
AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : short... 30 2.0
Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical p... 29 2.6
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 29 2.6
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 29 2.6
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 29 2.6
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 29 4.6
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical... 28 8.1
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 28 8.1
AF024492-6|AAF98616.1| 277|Caenorhabditis elegans Hypothetical ... 28 8.1
>AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical
protein ZC178.2 protein.
Length = 1459
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 451 ATWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLTTS 582
+T +S TAG SSTA S SS+ C T S T+T S
Sbjct: 1321 STMTVSSDSTTAGQSSTATNSASSETPCNSETQTSDGTSTMTVS 1364
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 451 ATWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLTTS 582
+T +S TAG SSTA S SS+ C T S T+T S
Sbjct: 645 STMTVSSDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVS 688
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 451 ATWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLTTS 582
+T +S TAG SSTA S SS+ C T S T+T S
Sbjct: 683 STMTVSSDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMTVS 726
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 451 ATWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLT 576
+T +S TAG SSTA S SS+ C T S T+T
Sbjct: 1397 STMTVSSDSTTAGQSSTATNSASSETPCNSETQTSDKTSTMT 1438
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 451 ATWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLTTS 582
+T +S TAG SST S SS+ C T S T+T S
Sbjct: 1283 STMTVSSDSTTAGPSSTVTNSASSETPCNSETQTSDGTSTMTVS 1326
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 451 ATWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLTTS 582
+T +S TAG SST S SS+ C T S T+T S
Sbjct: 1359 STMTVSSDSTTAGPSSTVTNSASSETPCNSETQTSDGTSTMTVS 1402
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 454 TWAGASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLTTS 582
T +S TAG SST S SS+ C T S T+T S
Sbjct: 494 TMTVSSDSTTAGPSSTVTNSASSETPCNSETQTSDGTSTMTVS 536
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +1
Query: 466 ASRRPTAGSSSTAPRSVSSD*RCTRTTAWSRTLGTLT 576
+S TAG SSTA S SS+ C T S T+T
Sbjct: 42 SSDSTTAGPSSTATNSASSETPCNSETQTSDGTSTMT 78
>Z83235-1|CAB05775.1| 174|Caenorhabditis elegans Hypothetical
protein K10C3.2 protein.
Length = 174
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/72 (25%), Positives = 30/72 (41%)
Frame = +2
Query: 290 TDLLAEDSVQSGRRERHTAQAGQLEDRPGEDTQERSLEH*LYSGSGDFALERPSQRGLAR 469
T L+ + Q A G+L RP ++ L+ + SGD+A+++
Sbjct: 17 TGALSPEKQQEQELMGKLAATGKLPARPASSFLQKKLQQRKFFDSGDYAMDKSKAGTGLG 76
Query: 470 ADGLPLEAPPPP 505
+ PL PPP
Sbjct: 77 SKPHPLAGGPPP 88
>Z68227-10|CAA92515.1| 95|Caenorhabditis elegans Hypothetical
protein F49C12.12 protein.
Length = 95
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/38 (28%), Positives = 25/38 (65%)
Frame = +3
Query: 594 GRLGVFCFSQEMIIWSNLLYKCNDKIPASIASGDFNKE 707
G LGVF + Q + ++ +L ++ + K+P+S+ +N++
Sbjct: 28 GLLGVFFYIQAVTLFPDLHFEGHGKVPSSVIDAKYNEK 65
>AF016687-1|AAC48094.2| 315|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 9 protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 482 PLEAPPPPQDRSHQT-EDVREQPPGRGLWEH 571
P +APPPPQD + E P G+ LW H
Sbjct: 285 PGKAPPPPQDYTRPAPESYPSAPNGQYLWIH 315
>Z68879-10|CAA93082.2| 473|Caenorhabditis elegans Hypothetical
protein K08F4.2 protein.
Length = 473
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 452 QRGLARADGLPLEAPPPPQDRSHQTEDVREQPPGRGLWEHL 574
++ +A+ P A PPQ R+ E V+EQP + W +L
Sbjct: 214 EKEVAKTPQKPQLAQQPPQQRAPVPEPVQEQPKVQKTWANL 254
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -2
Query: 272 DHIKPLVALVSKNKSNIIVVYLCVDEDGPLVVDSAEAVESDRQTRVRVQGLQDLSSVVRH 93
D PL L+ N + + LC DGP+V +E T VR+ G +DL+S +
Sbjct: 253 DEPNPLTKLIEDNVTYTKLYQLCKIPDGPIV---EHHIEMHFVTAVRM-GHRDLASALAQ 308
Query: 92 PPV 84
PV
Sbjct: 309 GPV 311
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -2
Query: 272 DHIKPLVALVSKNKSNIIVVYLCVDEDGPLVVDSAEAVESDRQTRVRVQGLQDLSSVVRH 93
D PL L+ N + + LC DGP+V +E T VR+ G +DL+S +
Sbjct: 253 DEPNPLTKLIEDNVTYTKLYQLCKIPDGPIV---EHHIEMHFVTAVRM-GHRDLASALAQ 308
Query: 92 PPV 84
PV
Sbjct: 309 GPV 311
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = -2
Query: 272 DHIKPLVALVSKNKSNIIVVYLCVDEDGPLVVDSAEAVESDRQTRVRVQGLQDLSSVVRH 93
D PL L+ N + + LC DGP+V +E T VR+ G +DL+S +
Sbjct: 253 DEPNPLTKLIEDNVTYTKLYQLCKIPDGPIV---EHHIEMHFVTAVRM-GHRDLASALAQ 308
Query: 92 PPV 84
PV
Sbjct: 309 GPV 311
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2
Query: 488 EAPPPPQDRSHQTEDVREQPPGR 556
E PP QDR E VRE PP R
Sbjct: 625 EVAPPRQDRYEDEERVREPPPKR 647
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 145 WRSDSTASAESTTRGPSSSTQR*TTI 222
W D T +A STT PS+ST TT+
Sbjct: 20 WAQDPTTTATSTTTVPSTSTVTTTTV 45
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +1
Query: 25 TSDSSPQSDWTLKASLNRSPTGG*RTT--ELRSCRP*TRTLVWRSDSTASAESTTRGPSS 198
TS+ S S T+ + S T G TT +S T + ST S+ STT GPS+
Sbjct: 418 TSEPSTTSGSTVSDTSGPSTTSGPSTTLGTTQSTTSGPSTTPGSTISTTSSASTTSGPST 477
Query: 199 ST 204
S+
Sbjct: 478 SS 479
>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
protein Y75B8A.13 protein.
Length = 1420
Score = 27.9 bits (59), Expect = 8.1
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Frame = +2
Query: 302 AEDSVQSGRRERHTAQAGQLEDRPGEDTQERSLEH*LYSGSGDFALERPSQRGLARADGL 481
AED V SG E TA +L+D G S + S S A P Q+ +
Sbjct: 862 AED-VSSGSHEDPTAARERLDDPQGLRESSPSSDE---SDSSSEAPGSPRQQDPEPIEAF 917
Query: 482 P--LEAPPPPQD-RSHQTEDVREQP 547
EAPPPP + S E + +QP
Sbjct: 918 TEASEAPPPPPNQGSEDPESILDQP 942
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 440 ERPSQ-RGLARADGLPLEA-PPPPQDRSHQTEDVREQPPGR 556
+RPS R A +PL+ PPPP + T+ + +P GR
Sbjct: 720 KRPSSGRYDALMGAMPLQQQPPPPPSQFQHTDSIAHRPRGR 760
>AF024492-6|AAF98616.1| 277|Caenorhabditis elegans Hypothetical
protein F14F9.2 protein.
Length = 277
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 479 LPLEAPPPPQDRSHQTEDVREQP 547
L +APPPP + Q EDV + P
Sbjct: 35 LKTDAPPPPPQPTEQKEDVSDLP 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,236
Number of Sequences: 27780
Number of extensions: 425078
Number of successful extensions: 1492
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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