Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0089
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.1  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   4.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   7.1  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.1  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 52   TSCSQPHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLRHDVAPHPIPER 225
            T+C+Q ++    QLQ  +CP     + + H     + + HPD +S         +P++
Sbjct: 2247 TNCAQYYLCNQGQLQLQVCPNGLFWN-KDHCDWPENTECHPDASSTMAPSTTPMVPDK 2303


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -2

Query: 170 CSCQDDYAGRCCSKE 126
           C C D Y+G  C  E
Sbjct: 170 CHCSDGYSGSYCQTE 184


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 166 EHPDQTSLRHDVAPHPIPERK-RSRPESST 252
           EHPD  + +    P P P+ +   R E+ T
Sbjct: 216 EHPDSPNSKKSATPSPPPQLEVNERKENLT 245


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 211 PIPERKRSRPESSTW 255
           P P +K+S P   TW
Sbjct: 44  PYPRQKKSHPPQWTW 58


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +2

Query: 188 FDTMSHPIRSLNVNAAVPSPAPGYS 262
           F++++ P  +  +    PSP PG+S
Sbjct: 307 FNSVATPTPTSVMTELYPSPVPGHS 331


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 170 CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTC 69
           C+C++ + G+ CS     +  H    +C    TC
Sbjct: 130 CNCKNGWKGKTCSL----KDSHCDHTTCKNGGTC 159


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 265 FGVTRCWTRDGCVYV 221
           + + RCW    C+YV
Sbjct: 219 YRLLRCWLISKCIYV 233


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -3

Query: 265 FGVTRCWTRDGCVYV 221
           + + RCW    C+YV
Sbjct: 219 YRLLRCWLISKCIYV 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,384
Number of Sequences: 336
Number of extensions: 3673
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)