Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0089
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 32 0.088
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 30 0.36
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 29 0.62
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 2.5
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 3.3
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.8
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 25 7.7
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 25 7.7
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 7.7
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 31.9 bits (69), Expect = 0.088
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = -3
Query: 538 QQKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVW 359
Q+ L TV+ + + D T ++ CH + K+F E S+ L K + W
Sbjct: 367 QRYNQKLLTVLSSNAESFNVSDMQTLGLNPCHSLDKSFVSEISQIWLKKHINWQYGKYFW 426
Query: 358 AAKTSL 341
+ SL
Sbjct: 427 LRRVSL 432
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 29.9 bits (64), Expect = 0.36
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +1
Query: 16 IKKQ*MTPRTNTTSCSQPHV-LVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPDQTSLR 192
++K +TP ++ + P + L+ SQ L P P LP+ S P Q S
Sbjct: 234 VRKSAVTPSSDPYNSPPPSIPLLGSQTNLQLAPSFAAPQAHP-LPSHLSQSNVPPQLS-- 290
Query: 193 HDVAPHPIPERKRSRP 240
H P P P R S+P
Sbjct: 291 HSSVPSPAPPRSVSQP 306
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 29.1 bits (62), Expect = 0.62
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 143 RCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHCFFICYPL 3
+CC G + +G+ K G E ++ GV HCF++ YP+
Sbjct: 269 QCC---GWDPLRDEGIAYEKALKAAGNETRLIVYEGVPHCFWVYYPM 312
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 553 HGVPEQQKEDTLATVVETIVSKLKLMDFN 467
H V E+TL+ + E ++S +K+ DFN
Sbjct: 613 HAVKYGPSENTLSLIPELLLSPIKVTDFN 641
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +1
Query: 178 QTSLRHDV--APHPIPERKRSRPESSTWLLR 264
Q SLR D +PHPIP S ES + +LR
Sbjct: 564 QVSLREDYWKSPHPIPPSSYSFVESPSSILR 594
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 166 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 255
+H + S HD P P+P ++P+ W
Sbjct: 224 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 252
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +1
Query: 166 EHPDQTSLRHDVAPHPIPERKRSRPESSTW 255
+H + S HD P P+P ++P+ W
Sbjct: 253 KHEEHCSCHHDKFPRPVP-HNGTKPDHKPW 281
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +1
Query: 316 RRVLFLSP*AKSWQPK 363
+++LF+ P AKSWQ K
Sbjct: 692 KKILFIIPEAKSWQKK 707
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 541 EQQKEDTLATVVETIVSKLKLMDFNTSNISRC 446
E Q DTLA + I+S + D++ N+S C
Sbjct: 15 EFQPTDTLAMLSAKILSDILKNDYSPENVSLC 46
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +2
Query: 374 QVHVA*LQKNGPRSFWSKCFTHSVTPGNVRCIKV---HKFQFTDNGF 505
Q H + K +W++ F +V P +V I++ KF+ D GF
Sbjct: 39 QTHTTKVIKKSVNPYWNEGFEVTVKPSSVISIRLFDQKKFKKKDQGF 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,227
Number of Sequences: 5004
Number of extensions: 58105
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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