Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0089
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0602 - 4484972-4485450,4485949-4485997,4486108-4486237,448...    31   0.84 
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    29   2.6  
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    29   3.4  
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177...    29   4.5  
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    29   4.5  

>01_01_0602 -
           4484972-4485450,4485949-4485997,4486108-4486237,
           4486636-4486778,4486819-4486877,4487167-4487200,
           4487489-4487629,4487719-4487907,4488027-4488122,
           4488163-4488225,4488588-4489097
          Length = 630

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 26/90 (28%), Positives = 43/90 (47%)
 Frame = -3

Query: 535 QKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVWA 356
           +K+ TLAT +E  + K + ++  T+N  R   +   +T  + RP  LK+ +   R  V A
Sbjct: 480 KKDVTLATRIEEAMKKNESLEALTTNNVRRAAVNPQYTSTKGRPSALKVVNQKGRRGV-A 538

Query: 355 AKTSLKGSGITLSEFLTKRRHDIFMSARQR 266
            +T  K S I      ++RR  I    R +
Sbjct: 539 LQT--KSSRIVKDTTSSRRRSPIRSQPRSK 566


>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -3

Query: 532 KEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVWAA 353
           K D +   V ++    +  + ++  +S  +R   + TPERS   + +L D +L  + W  
Sbjct: 284 KHDVIRETVPSLHVVAEETENDSKTVSTSNRENTSGTPERSFSSVHQLEDSDLSDEDWND 343

Query: 352 KTSLKGSGIT 323
           + S  GSG +
Sbjct: 344 EDSGSGSGFS 353


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 100 PLCPCRFVPSFEQ---HLPA*SSWQEHPDQTSLRHDVAPHPIPERKRSRPE 243
           PL P   + S E+   H  A  S ++   +TS RH   P P PE K+  P+
Sbjct: 77  PLKPSLSLSSSEEESTHADAAKSGKKEEAETSERHSSPPPPPPEAKKVTPD 127


>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
            1778770-1778900,1779530-1779788,1779823-1780098,
            1780100-1781352
          Length = 1344

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/68 (30%), Positives = 33/68 (48%)
 Frame = -3

Query: 553  HGVPEQQKEDTLATVVETIVSKLKLMDFNTSNISRCHRMGKTFTPERSRPILLKLCDMNL 374
            HG   +++  +LAT   T  S   +   N + I    + GK  T +  RPI L+ C + +
Sbjct: 943  HGTQLKRRFFSLATGFTT--SGADIERINRAYIVLIQKPGKENTVDGYRPISLQNCSVKI 1000

Query: 373  RSKVWAAK 350
             SKV A +
Sbjct: 1001 LSKVLATR 1008


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 28/82 (34%), Positives = 37/82 (45%)
 Frame = -3

Query: 658 TFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQKEDTLATVVETIVSKLKL 479
           +F L   R L TQV+ +     ++E HSR +I L+     Q KE + AT VE  V     
Sbjct: 265 SFDLMTYR-LSTQVKPLIWVEAQIEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPS- 322

Query: 478 MDFNTSNISRCHRMGKTFTPER 413
            D    NI R       + PER
Sbjct: 323 -DATNPNI-RTSMGSAAYAPER 342


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,822,276
Number of Sequences: 37544
Number of extensions: 408872
Number of successful extensions: 1155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)