Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0089
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 32 0.44
U58752-6|AAB00668.1| 308|Caenorhabditis elegans C-type lectin p... 31 1.0
AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous... 30 1.8
AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transien... 30 1.8
AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transien... 30 1.8
AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical ... 29 2.3
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 3.1
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 4.1
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 4.1
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 4.1
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 4.1
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z67738-1|CAA91545.2| 352|Caenorhabditis elegans Hypothetical pr... 28 5.4
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 5.4
Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 7.1
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 7.1
Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 9.4
U29380-12|AAR12986.1| 485|Caenorhabditis elegans Hypothetical p... 27 9.4
U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical p... 27 9.4
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 27 9.4
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 27 9.4
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.4
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 9.4
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
Frame = -2
Query: 170 CSCQDDYAGRCCSK------EGTNRQGHKGVCSCDQTKTCGC 63
CSC +DY G CSK E + + G+C TKTC C
Sbjct: 906 CSCFEDYGGSDCSKCVGDSCEACDFDCNHGICE-PLTKTCSC 946
>U58752-6|AAB00668.1| 308|Caenorhabditis elegans C-type lectin
protein 51 protein.
Length = 308
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +1
Query: 34 TPRTNTTSCSQ--PHVLVWSQLQTPLCPCRFVPSFEQHLPA*SSWQEHPD 177
T + TT+C+ P + +S TP CP +PS H P+ +W + D
Sbjct: 131 TAKWQTTNCTAQLPFICSYSSSVTPTCPSVTIPS---HCPSGYTWYDETD 177
>AJ276028-1|CAC81655.1| 816|Caenorhabditis elegans TRP homlogous
cation channel proteinprotein.
Length = 816
Score = 29.9 bits (64), Expect = 1.8
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = -3
Query: 670 LAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVV 506
++ +TF +N L L LI++EN+ +EM ++LL H + + V
Sbjct: 56 ISTETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAV 112
Query: 505 ETIVSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRS-KVWAAK--TSLK 338
E IV L+ MD F++ FTP+ + PI+L N K++ K T
Sbjct: 113 EIIVEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVLAAHKDNYECIKLFLDKKGTVPH 171
Query: 337 GSGITLS--EFLTKRRHDIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEVMSDLDAL 164
+ S E R D +R R R T + + D + + E+ +L L
Sbjct: 172 PHDVRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLICLSARDPILYAFELSWELKRL 231
Query: 163 A 161
+
Sbjct: 232 S 232
>AF040654-5|AAN65302.2| 816|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform a
protein.
Length = 816
Score = 29.9 bits (64), Expect = 1.8
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = -3
Query: 670 LAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVV 506
++ +TF +N L L LI++EN+ +EM ++LL H + + V
Sbjct: 56 ISTETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAV 112
Query: 505 ETIVSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRS-KVWAAK--TSLK 338
E IV L+ MD F++ FTP+ + PI+L N K++ K T
Sbjct: 113 EIIVEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVLAAHKDNYECIKLFLDKKGTVPH 171
Query: 337 GSGITLS--EFLTKRRHDIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEVMSDLDAL 164
+ S E R D +R R R T + + D + + E+ +L L
Sbjct: 172 PHDVRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLICLSARDPILYAFELSWELKRL 231
Query: 163 A 161
+
Sbjct: 232 S 232
>AF040654-4|AAN65303.2| 886|Caenorhabditis elegans Trp (transient
receptor potential)channel family protein 2, isoform b
protein.
Length = 886
Score = 29.9 bits (64), Expect = 1.8
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 11/181 (6%)
Frame = -3
Query: 670 LAFKTFTLNALRALQTQVELISLENDRLEMHSRRKILLIHGVPEQQK-----EDTLATVV 506
++ +TF +N L L LI++EN+ +EM ++LL H + + V
Sbjct: 56 ISTETFNINCLDPLGRNALLIAIENENIEM---IELLLDHNIETGDAILYAIGEENVEAV 112
Query: 505 ETIVSKLKLMD-FNTSNISRCHRMGKTFTPERSRPILLKLCDMNLRS-KVWAAK--TSLK 338
E IV L+ MD F++ FTP+ + PI+L N K++ K T
Sbjct: 113 EIIVEHLEKMDKFDSERQGVEITEHSAFTPDIT-PIVLAAHKDNYECIKLFLDKKGTVPH 171
Query: 337 GSGITLS--EFLTKRRHDIFMSARQRFGVTRCWTRDGCVYVQGSDGVRHRVEVMSDLDAL 164
+ S E R D +R R R T + + D + + E+ +L L
Sbjct: 172 PHDVRCSCPECYVAREEDSLRLSRSRINAYRALTSPSLICLSARDPILYAFELSWELKRL 231
Query: 163 A 161
+
Sbjct: 232 S 232
>AF024494-6|AAB70330.1| 135|Caenorhabditis elegans Hypothetical
protein C38C3.6 protein.
Length = 135
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 230 AAVPSPAPGYSEALTCRHKNIMTSFSQELGECYS 331
A V AP Y EA+TCR NI +L Y+
Sbjct: 52 APVNEEAPPYGEAVTCRTDNIFAITEPDLSRYYN 85
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -2
Query: 212 GWGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQ 81
G+ C+S++ S C+ +G C + G+K +C +Q
Sbjct: 51 GFTGNDCKSELGSACATSPCRSGATCESVDNSTAGYKCICKWNQ 94
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 218 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 42
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 41 LGVIHCFFICYP 6
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 218 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 42
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 41 LGVIHCFFICYP 6
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 218 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 42
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 41 LGVIHCFFICYP 6
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -2
Query: 218 GIGWGATSCRSDV*SG-CSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFV 42
G+ + ++ D +G C C+ Y G C + + + + CS KTC C +E +
Sbjct: 338 GLEFSDSNASCDAKTGQCQCESGYKGPKCDERKCDAEQYGADCS----KTCTCVRENTLM 393
Query: 41 LGVIHCFFICYP 6
F C P
Sbjct: 394 CAPNTGFCRCKP 405
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -2
Query: 203 ATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQT----KTCGCEQEV 51
AT+ R D C C C + T Q + CSC T K+C C Q V
Sbjct: 19 ATTIR-DKRQSCGCAPRVQPSCSCQRTTYTQPQQYSCSCQNTAPVQKSCSCAQPV 72
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -2
Query: 203 ATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQT----KTCGCEQEV 51
AT+ R D C C C + T Q + CSC T K+C C Q V
Sbjct: 19 ATTIR-DKRQSCGCAPRVQPSCSCQRTTYTQPQQYSCSCQNTAPVQKSCSCAQPV 72
>Z67738-1|CAA91545.2| 352|Caenorhabditis elegans Hypothetical
protein W03G11.2 protein.
Length = 352
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 164 KSIQIRHHFDTMSHPIRSLNVNAAVPSPAPGYSE 265
K I IRH +D ++ +N+ +PSP Y E
Sbjct: 71 KVILIRHRYDNVAEGYIDINITRFIPSPVYFYYE 104
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = -2
Query: 209 WGATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGH----KGVCSCDQT-KTCGCE 60
+G ++D C+C D Y+G C + N H +G C + C CE
Sbjct: 1302 FGQCMQKTDTFFECNCMDGYSGELCEQRDVNECNHYDCNRGHCVMTVSGPACQCE 1356
>Z81129-4|CAB03405.1| 330|Caenorhabditis elegans Hypothetical
protein T23F1.6 protein.
Length = 330
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/64 (21%), Positives = 22/64 (34%)
Frame = -2
Query: 203 ATSCRSDV*SGCSCQDDYAGRCCSKEGTNRQGHKGVCSCDQTKTCGCEQEVVFVLGVIHC 24
A+S R + C C C ++ + + CSC + C C + L C
Sbjct: 17 ASSIRETRQASCGCAQSVQPTCSCQQASQQYS----CSCQPSTPCSCASSQQYQLQTSQC 72
Query: 23 FFIC 12
C
Sbjct: 73 MPAC 76
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 242 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 129
+G ++ G G +T C +D C C D GR C +
Sbjct: 1841 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1876
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 242 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 129
+G ++ G G +T C +D C C D GR C +
Sbjct: 1841 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1876
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 242 SGRLRLRSGIGWGATSCRSDV*SGCSCQDDYAGRCCSK 129
+G ++ G G +T C +D C C D GR C +
Sbjct: 1860 NGCVKCECGFGADSTECSAD--GHCKCNGDAVGRRCDR 1895
>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
protein C11E4.6 protein.
Length = 1170
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 136 QHLPA*SSWQEHPDQTSLRHDV-APHPIPERKRS-RPESSTWLLRSV 270
Q LP+ +S Q +PDQ H + P I R R P+ ST L SV
Sbjct: 341 QPLPSQASVQVYPDQRRNNHSIYQPPSISARLRDLSPDDSTEALNSV 387
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical
protein K08C7.3b protein.
Length = 3672
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 212 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 129
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical
protein K08C7.3a protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 212 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 129
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
>U29380-12|AAR12986.1| 485|Caenorhabditis elegans Hypothetical
protein ZK546.2a protein.
Length = 485
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 508 VETIVSKLKLMDFNTSNISRCHRM 437
+ I++K +L+ NT+N+ RC R+
Sbjct: 157 ISVILNKNRLLSLNTANLLRCERL 180
>U29380-11|AAR12987.1| 501|Caenorhabditis elegans Hypothetical
protein ZK546.2c protein.
Length = 501
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 508 VETIVSKLKLMDFNTSNISRCHRM 437
+ I++K +L+ NT+N+ RC R+
Sbjct: 157 ISVILNKNRLLSLNTANLLRCERL 180
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 203 ATSCRSDV*SG-CSCQDDYAGRCCSK---EGTNRQGHKGVCSCDQTKTC 69
A S D SG C C YAG C++ +GT + C C + C
Sbjct: 1260 ANSKSCDHISGRCQCPKGYAGHSCTELCPDGTFGESCSQKCDCGENSMC 1308
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Frame = -2
Query: 203 ATSCRSDV*SG-CSCQDDYAGRCCSK---EGTNRQGHKGVCSCDQTKTC 69
A S D SG C C YAG C++ +GT + C C + C
Sbjct: 1260 ANSKSCDHISGRCQCPKGYAGHSCTELCPDGTFGESCSQKCDCGENSMC 1308
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 212 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 129
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -2
Query: 212 GWGATSCRSDV*SG-CSCQDDYAGRCCSK 129
G G TS D SG C C ++ GR C K
Sbjct: 614 GAGITSPECDATSGQCPCNGNFTGRTCDK 642
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,892,618
Number of Sequences: 27780
Number of extensions: 350117
Number of successful extensions: 1141
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -