Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0089
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   8.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   8.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 123 HKPARTQRSLQLRPDQNVWLRTRSSVRSR 37
           H+      S  +RP +NV +    S+R+R
Sbjct: 229 HRNLEATESENVRPRRNVLIERAKSIRAR 257


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 244 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 146
           T +GC          H + V   +D +A+ T P
Sbjct: 439 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 471


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 244 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 146
           T +GC          H + V   +D +A+ T P
Sbjct: 425 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 457


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 244 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 146
           T +GC          H + V   +D +A+ T P
Sbjct: 459 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 491


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 244 TRDGCVYVQGSDGVRHRVEVMSDLDALAKTTMP 146
           T +GC          H + V   +D +A+ T P
Sbjct: 408 TTNGCTAELRKKEPPHPIRVAKTIDVIARITFP 440


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 532 SVVQEHRVSEEFFSLSAFL 588
           S +Q+ R   E+F LSAFL
Sbjct: 39  SSLQQRRGGLEYFLLSAFL 57


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 43  TNTTSCSQPHVLVWSQLQTPL 105
           + TTS  + HVL  + L +PL
Sbjct: 636 STTTSPDKEHVLAHNDLMSPL 656


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,786
Number of Sequences: 438
Number of extensions: 3636
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)