Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0087
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0026 - 22222743-22222836,22223510-22223652,22224654-222246...    30   2.0  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    29   3.5  
05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737           29   3.5  
09_02_0085 + 4111333-4111492,4114766-4116044,4116113-4116206,411...    29   4.6  
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    29   4.6  
03_06_0680 - 35497868-35497884,35498058-35501961                       28   6.0  
03_05_0777 + 27636342-27637115                                         28   6.0  
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842...    28   6.0  

>04_04_0026 -
           22222743-22222836,22223510-22223652,22224654-22224699,
           22224916-22225043,22225178-22225285
          Length = 172

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
 Frame = +3

Query: 417 KEKGIFVVAKEKVGN-NTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASV--TKSFAN 587
           KEK   +      G+ N+     SS + +  D Y + I   D    +    V  TKS   
Sbjct: 82  KEKDAIMFTHPPAGSFNSTGLVISSKLPRFSDMYTITIASADPQSISANKPVHFTKSVTK 141

Query: 588 FIDVNGTVVQNIVSNEITKLYHSLSSEKKEK 680
           +    G +V+ +   ++ +L    ++E+K K
Sbjct: 142 WFTKEGVLVEGLFWKDVERLIDDYNTERKGK 172


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 534 RDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKK 674
           RDT  NT +  +++S    +      V N++S++ T L + L+   K
Sbjct: 617 RDTKSNTDKPPISQSSGQIVSFTSNPVFNVISSKPTTLSNGLADTTK 663


>05_03_0098 + 8375038-8375063,8375351-8377049,8377159-8377737
          Length = 767

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +3

Query: 531 MRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKKE 677
           ++D NGN  +A ++ +  N  D++  ++  +   +ITK   +LSS  KE
Sbjct: 703 IKDFNGNHFDAVLSTALKNMSDIDNCMLFAVQDCQITKPARTLSSLVKE 751


>09_02_0085 +
           4111333-4111492,4114766-4116044,4116113-4116206,
           4116297-4116545
          Length = 593

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 426 GIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVN 602
           G+ V+A   +  +T V+     V +H DKY L++    T  +TR      ++  F+D++
Sbjct: 444 GLLVMASGDLHEHTAVFFR---VFRHHDKYKLLMCTDLTKSSTRAGVYKPAYGGFVDMD 499


>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 314 MGLSLSIPSIKTGSNHLRVIIFHTDGYFDPLHY 412
           M LSL +PS  T    + V +F TDG  +P+ Y
Sbjct: 434 MYLSLPVPS--TAKRTMTVTVFSTDGSIEPISY 464


>03_06_0680 - 35497868-35497884,35498058-35501961
          Length = 1306

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +3

Query: 144 EAAKINKWDGAAAKNAVDDAIREVMTG 224
           EAA+  K +   AKN+  DA++EV++G
Sbjct: 246 EAARKEKNENVMAKNSPQDALKEVLSG 272


>03_05_0777 + 27636342-27637115
          Length = 257

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 138 TAEAAKINKWDGAAAKNAVDDAIREVMTGDLKCKESFAL 254
           TAEAA++ +W   A  + VD A R  +  D++ + ++ L
Sbjct: 130 TAEAAELERWRRHAMASLVDAAKRAAVMKDMEIERAWGL 168


>01_07_0297 -
           42583439-42583697,42583763-42583953,42583995-42584201,
           42584291-42584362,42584472-42584507
          Length = 254

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 395 FDPLHYIKREGHLCGSQGEG 454
           ++ +  I+REGHLCG  G G
Sbjct: 182 YEIVRIIQREGHLCGMTGNG 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,384
Number of Sequences: 37544
Number of extensions: 360147
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)