Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0087
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094832-1|AAM11185.1|  199|Drosophila melanogaster LD42119p pro...   173   2e-43
AE014298-1630|AAF48051.1|  199|Drosophila melanogaster CG1751-PA...   173   2e-43
AY113491-1|AAM29496.1|  694|Drosophila melanogaster RE48269p pro...    29   7.9  
AE014134-1779|AAF52873.2|  694|Drosophila melanogaster CG4901-PA...    29   7.9  

>AY094832-1|AAM11185.1|  199|Drosophila melanogaster LD42119p
           protein.
          Length = 199

 Score =  173 bits (421), Expect = 2e-43
 Identities = 83/179 (46%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
 Frame = +3

Query: 144 EAAKINKWDGAAAKNAVDDAIREVMTGDL-KCKESFALIDGRLFXXXXXXXXXXXXXXWD 320
           E  K+NKWDG+A K+A+DDA++  + GD  + KE F L++ RL               WD
Sbjct: 13  ELVKVNKWDGSAVKHALDDAVKTCLLGDRPQLKEQFGLVNTRLALCALAVSVAIMAHAWD 72

Query: 321 YLYPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKK 500
           + +PFP+SR VL+  V +YF L+GILTL+++ +EKG F VA +K     R+WEASS ++K
Sbjct: 73  FTHPFPESRPVLLFSVLAYFALLGILTLHSSFREKGTFAVALQKDKERERLWEASSDMRK 132

Query: 501 HDDKYNLVIVMRDT-NGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKK 674
           +DDKY L + +RDT NG  RE S  KS A FID NG V+ N+V+NE+ +L+++L+++KK
Sbjct: 133 YDDKYLLTLSVRDTKNGKRREQSSNKSCAAFIDQNGIVLDNLVANEVNRLFNALAADKK 191


>AE014298-1630|AAF48051.1|  199|Drosophila melanogaster CG1751-PA
           protein.
          Length = 199

 Score =  173 bits (421), Expect = 2e-43
 Identities = 83/179 (46%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
 Frame = +3

Query: 144 EAAKINKWDGAAAKNAVDDAIREVMTGDL-KCKESFALIDGRLFXXXXXXXXXXXXXXWD 320
           E  K+NKWDG+A K+A+DDA++  + GD  + KE F L++ RL               WD
Sbjct: 13  ELVKVNKWDGSAVKHALDDAVKTCLLGDRPQLKEQFGLVNTRLALCALAVSVAIMAHAWD 72

Query: 321 YLYPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKK 500
           + +PFP+SR VL+  V +YF L+GILTL+++ +EKG F VA +K     R+WEASS ++K
Sbjct: 73  FTHPFPESRPVLLFSVLAYFALLGILTLHSSFREKGTFAVALQKDKERERLWEASSDMRK 132

Query: 501 HDDKYNLVIVMRDT-NGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSLSSEKK 674
           +DDKY L + +RDT NG  RE S  KS A FID NG V+ N+V+NE+ +L+++L+++KK
Sbjct: 133 YDDKYLLTLSVRDTKNGKRREQSSNKSCAAFIDQNGIVLDNLVANEVNRLFNALAADKK 191


>AY113491-1|AAM29496.1|  694|Drosophila melanogaster RE48269p
           protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 327 YPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKKHD 506
           YP       L++  SS+  +  IL+L + L    +FV   EK  N       + +  KH 
Sbjct: 491 YPLDPKYSKLLLTASSFGCMEEILSLVSVLSSDHVFVSNSEK--NEMAALAHAKFQSKHG 548

Query: 507 DKYNLVIV 530
           D   L+ V
Sbjct: 549 DHLTLLNV 556


>AE014134-1779|AAF52873.2|  694|Drosophila melanogaster CG4901-PA
           protein.
          Length = 694

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 19/68 (27%), Positives = 29/68 (42%)
 Frame = +3

Query: 327 YPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYVKKHD 506
           YP       L++  SS+  +  IL+L + L    +FV   EK  N       + +  KH 
Sbjct: 491 YPLDPKYSKLLLTASSFGCMEEILSLVSVLSSDHVFVSNSEK--NEMAALAHAKFQSKHG 548

Query: 507 DKYNLVIV 530
           D   L+ V
Sbjct: 549 DHLTLLNV 556


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,428,178
Number of Sequences: 53049
Number of extensions: 603321
Number of successful extensions: 1200
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)