Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0087
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...   121   4e-28
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical p...    29   3.1  
AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical...    28   7.2  
Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical pr...    27   9.5  
L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protei...    27   9.5  
L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protei...    27   9.5  
AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell...    27   9.5  

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score =  121 bits (292), Expect = 4e-28
 Identities = 63/175 (36%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
 Frame = +3

Query: 138 TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXX 314
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 315 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTLKEKGIFVVAKEKVGNNTRVWEASSYV 494
           +DY  PFP+S++VL +C  SYFI MGIL +Y    EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 495 KKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHSL 659
           K HDDKY L    +   G + +  +TKS   +ID +G ++  +V  E+  LY+ L
Sbjct: 122 KAHDDKYTLSAEFK-KEGRSGQGKITKSIGAYIDNDGEIIVPLVKKEVDDLYNRL 175


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 558 HECCHSCLA*QLRDCIYRRVSLHKNWLPRPW 466
           HE  HS L  QL+  +  R   HKNWL   W
Sbjct: 46  HEFQHSELGAQLQSALENRAKNHKNWLEDWW 76


>U27312-13|AAA68256.1|  162|Caenorhabditis elegans Hypothetical
           protein F26A1.14 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 477 EASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDVNGTVVQNIVSNEITKLYHS 656
           E S   K   + +  +I++R   G+ + +++ +   N  + NG +V+N VSN IT+    
Sbjct: 15  EISDIQKCLVEGHRTIILIRGVTGSGK-STLARELVNHSE-NGVIVKNDVSNNITRSVRK 72

Query: 657 LSSEKK 674
              E K
Sbjct: 73  FIDEDK 78


>AF036693-11|AAK29788.1|  392|Caenorhabditis elegans Hypothetical
           protein C49A9.1 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 420 EKGIFVVAKEKVGNNTRVWEASSYVKKHDDKYNLVIVMRDTNGNTREASVTKSFANFIDV 599
           E G F     K  +N + WE   Y  K +   N  +V+ + NGN  +  +T +  N+   
Sbjct: 280 ELGYFFEGIFKQKSNGK-WECEQYNNKIEPLINGTVVINEYNGN-EKVELTTTVTNYKPK 337

Query: 600 NGT 608
           N T
Sbjct: 338 NNT 340


>Z50794-6|CAA90659.2|  388|Caenorhabditis elegans Hypothetical
           protein F59F5.5 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -3

Query: 678 FPSSRMRGCGTAW*SH*IQCF--ELQCRSRR*SWQTTWSRMPHE-CCHSCLA*QLRDC 514
           FPS + RGC  A     I CF  + QC +R        SR+P   CCH C +    DC
Sbjct: 66  FPSGQ-RGCQYASNMDTIHCFCDQDQCNTRHKLGSYIPSRLPSVECCH-CTSRHGEDC 121


>L19639-1|AAC37168.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 380 HTDGYFDPLHYIKREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 559
           H   Y+DP    +   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 560 GIRD 571
           G  D
Sbjct: 120 GDDD 123


>L19248-1|AAB04137.1|  253|Caenorhabditis elegans homeobox protein
           protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 380 HTDGYFDPLHYIKREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 559
           H   Y+DP    +   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 560 GIRD 571
           G  D
Sbjct: 120 GDDD 123


>AC006605-9|AAK85445.1|  253|Caenorhabditis elegans Abnormal cell
           lineage protein 39 protein.
          Length = 253

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +2

Query: 380 HTDGYFDPLHYIKREGHLCGSQGEGWK*HQGLGSQFLCKETRR*IQSRNCYARHEWQHS* 559
           H   Y+DP    +   +   SQG G   +  LG Q LC      + S      H+W+H  
Sbjct: 66  HFGSYYDPTSSSQIASYFASSQGLGGPQYPILGDQSLCYNPS--VTS----THHDWKHLE 119

Query: 560 GIRD 571
           G  D
Sbjct: 120 GDDD 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,960
Number of Sequences: 27780
Number of extensions: 309221
Number of successful extensions: 769
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)