Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0085
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   1.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   1.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   3.4  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   4.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   5.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    20   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 53  QEAFQLFDS-RGDGKIHVAQIGDAL 124
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 53  QEAFQLFDS-RGDGKIHVAQIGDAL 124
           + +F ++ S +GDGK H+   G+ L
Sbjct: 170 EPSFYIYPSLQGDGKFHLLPTGELL 194


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 311 THCHLCQNGADPQ*SH*QCR 252
           T C  C+ G  P  +H  CR
Sbjct: 624 TQCISCRQGTVPDETHSACR 643


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 116 LRSERHVSFHLHEN 75
           L SE+H SF  H N
Sbjct: 105 LNSEKHASFLKHSN 118



 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 253 ATACFRYGLVNWQKHLKRYPF 191
           A   +  G+V WQ   ++ PF
Sbjct: 234 AADIYSLGIVAWQMLFRKLPF 254


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +3

Query: 174 FILNLMKGYLLRCFCQFTRPYRKHAVATLLMTLLRVCAIL 293
           ++  L    LL      ++P R H      M ++++C IL
Sbjct: 181 YMSELTVDILLETAMGVSKPTRDHNAFEYAMAVMKMCDIL 220


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +3

Query: 15  IWLDIQRINWQNFKKPSSSSIL 80
           IW   +R+ W+   K +S +I+
Sbjct: 54  IWFQNRRMKWKKEHKMASMNIV 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,155
Number of Sequences: 438
Number of extensions: 1917
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)