Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001556108 Cluster: PREDICTED: similar to Glycogen s...    68   7e-11
UniRef50_Q4S0H0 Cluster: Chromosome 2 SCAF14781, whole genome sh...    68   7e-11
UniRef50_Q2PQN7 Cluster: Shaggy; n=1; Glossina morsitans morsita...    62   3e-09
UniRef50_P49840 Cluster: Glycogen synthase kinase-3 alpha; n=177...    56   2e-07
UniRef50_P83101 Cluster: Putative glycogen synthase kinase-3 hom...    38   0.067
UniRef50_UPI0000E804EE Cluster: PREDICTED: similar to Almstrom s...    37   0.16 
UniRef50_Q23FK4 Cluster: Putative uncharacterized protein; n=1; ...    36   0.36 
UniRef50_Q8IJ65 Cluster: Putative uncharacterized protein; n=2; ...    33   1.9  
UniRef50_Q69HW2 Cluster: OqxB; n=74; cellular organisms|Rep: Oqx...    32   3.3  
UniRef50_A2DG77 Cluster: Putative uncharacterized protein; n=1; ...    32   4.4  
UniRef50_A3U8H7 Cluster: Glycosyl transferase; n=1; Croceibacter...    31   7.7  

>UniRef50_UPI0001556108 Cluster: PREDICTED: similar to Glycogen
           synthase kinase 3 beta; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to Glycogen synthase
           kinase 3 beta - Ornithorhynchus anatinus
          Length = 593

 Score = 67.7 bits (158), Expect = 7e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +3

Query: 288 KDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           KDGSKVTTVVATPGQGPDRPQEVSY D K+IGN
Sbjct: 87  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGN 119


>UniRef50_Q4S0H0 Cluster: Chromosome 2 SCAF14781, whole genome
           shotgun sequence; n=3; Euteleostomi|Rep: Chromosome 2
           SCAF14781, whole genome shotgun sequence - Tetraodon
           nigroviridis (Green puffer)
          Length = 496

 Score = 67.7 bits (158), Expect = 7e-11
 Identities = 30/33 (90%), Positives = 31/33 (93%)
 Frame = +3

Query: 288 KDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           KDGSKVTTVVATPGQGPDRPQEVSY D K+IGN
Sbjct: 41  KDGSKVTTVVATPGQGPDRPQEVSYTDTKVIGN 73


>UniRef50_Q2PQN7 Cluster: Shaggy; n=1; Glossina morsitans
           morsitans|Rep: Shaggy - Glossina morsitans morsitans
           (Savannah tsetse fly)
          Length = 484

 Score = 62.5 bits (145), Expect = 3e-09
 Identities = 30/42 (71%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
 Frame = +3

Query: 264 VFYLKNI-GKDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           V   KNI G+DG+K+TTVVATPGQG DR QEVSY D K+IGN
Sbjct: 258 VHKFKNILGRDGAKITTVVATPGQGTDRVQEVSYTDTKVIGN 299


>UniRef50_P49840 Cluster: Glycogen synthase kinase-3 alpha; n=177;
           Eukaryota|Rep: Glycogen synthase kinase-3 alpha - Homo
           sapiens (Human)
          Length = 483

 Score = 56.4 bits (130), Expect = 2e-07
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = +3

Query: 282 IGKDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           +G+D  KVTTVVAT GQGP+R QEV+Y D+K+IGN
Sbjct: 93  LGRDSGKVTTVVATLGQGPERSQEVAYTDIKVIGN 127


>UniRef50_P83101 Cluster: Putative glycogen synthase kinase-3
           homolog; n=1; Drosophila melanogaster|Rep: Putative
           glycogen synthase kinase-3 homolog - Drosophila
           melanogaster (Fruit fly)
          Length = 501

 Score = 37.9 bits (84), Expect = 0.067
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = +3

Query: 276 KNIGKDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           KN G   +KVTTVVAT   G D   E+SY D K++GN
Sbjct: 6   KNSGLT-NKVTTVVATNAFGADVMSEISYTDAKVVGN 41


>UniRef50_UPI0000E804EE Cluster: PREDICTED: similar to Almstrom
           syndrome 1 protein; n=6; Gallus gallus|Rep: PREDICTED:
           similar to Almstrom syndrome 1 protein - Gallus gallus
          Length = 2322

 Score = 36.7 bits (81), Expect = 0.16
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +3

Query: 204 TYTVNADPDKRDTRIKNVLPVFYLKNIGKDGSKVTTVVATPGQGPDRPQEVSYADMKLI 380
           T TV   P+K +  I+  +P+ YL+N+G D S  T +     +GP R  E S +D++ +
Sbjct: 790 TATVLETPEKEELNIEERIPI-YLRNLGIDQSPGTILTPFVPRGPIREVEFSPSDLRTL 847


>UniRef50_Q23FK4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 567

 Score = 35.5 bits (78), Expect = 0.36
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +2

Query: 5   QCLFISIRQRTLFKRNVLCAMKFIIKSVMF--FYEPICFCENNEYGCYFFVICDCLKKSK 178
           Q L ISI Q+T+  ++++C +   + S++F  + + I F  NN    Y F  C  + +  
Sbjct: 364 QQLQISINQKTVLNQHLICQLNGAVNSLIFDLYVQCIEFSLNNSANFYVFNECSQILQET 423

Query: 179 INDAA 193
           IN  A
Sbjct: 424 INQGA 428


>UniRef50_Q8IJ65 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 1473

 Score = 33.1 bits (72), Expect = 1.9
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 23  IRQRTLFKRNVLCAMKFIIKSVMFFYEPICFCENNEY-GCYFFVICDCLKK 172
           I+  ++F+RN+ C+  F+I S+          EN  Y  CY + IC  LKK
Sbjct: 184 IKLCSIFERNIFCS--FLIPSIKSILRKNDHLENKIYISCYLYNICKMLKK 232


>UniRef50_Q69HW2 Cluster: OqxB; n=74; cellular organisms|Rep: OqxB -
           Escherichia coli
          Length = 1050

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 246 IKNVLPVFYLKNI-GKDGSKVTTVVATPGQGPDRPQ 350
           I  V  + Y+K++ G DG  VTTV   PG  PD+ Q
Sbjct: 71  INGVENMMYMKSVAGSDGVLVTTVTFRPGNDPDQAQ 106


>UniRef50_A2DG77 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 1151

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -3

Query: 365 SIAHFLRPVRALPRRRYHSRHL*AVLAYIFQIKYRKDIFYSSVPFIRIGIHCVSSPTSQH 186
           SI   L P  AL  +RY+      VL + F + +    F + + +I I + C+ + +  +
Sbjct: 564 SILDVLIPTSALIHKRYY-HFFKPVLKHEFDLVHNVQFFNAVLNYISIILTCIENNSHMY 622

Query: 185 RLFYFFSDSHIS 150
            + YF  +S ++
Sbjct: 623 EIVYFIFESFLN 634


>UniRef50_A3U8H7 Cluster: Glycosyl transferase; n=1; Croceibacter
           atlanticus HTCC2559|Rep: Glycosyl transferase -
           Croceibacter atlanticus HTCC2559
          Length = 296

 Score = 31.1 bits (67), Expect = 7.7
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +2

Query: 11  LFISIRQRTLFKRNVLCAMKFIIKSVMFFYEPICF-CENNEY 133
           L+I   ++ LF+  V+   K I+K+++FF +P+ F  +NN +
Sbjct: 250 LYIKSAKKNLFRMIVIKHPKLILKNLIFFRQPLIFKLKNNRF 291


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,784,821
Number of Sequences: 1657284
Number of extensions: 7434249
Number of successful extensions: 18698
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18695
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 15718494179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)