Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    29   0.34 
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    25   3.1  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    25   5.5  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   5.5  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    24   7.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    24   9.6  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    24   9.6  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    24   9.6  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 28.7 bits (61), Expect = 0.34
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +2

Query: 26  RQRTLFKRNVLCAMKFIIKSVMFFYE--PI---CFCENNEYGCY 142
           +QRT + RN+    K  +   M +Y+  P    C C  +EYGC+
Sbjct: 260 KQRT-WCRNICLLSKLFLDHKMLYYDVDPFLFYCMCRRDEYGCH 302


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 344 PVRALPRRRYHSRHL*AVLAYIFQIKYRKD 255
           P   LP RRY +RH+ A+ + +     RKD
Sbjct: 27  PPIPLPSRRYKTRHIDALCSLMHLCLLRKD 56


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 291 PCLYFSDKIQEGHFLF*CPF 232
           PCLY  +K + GH +F C F
Sbjct: 126 PCLYDIEKFEYGHEIF-CTF 144


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 134 HIRCFHKNRLVHRRTSP 84
           H RCFH  R V   T P
Sbjct: 71  HARCFHATRAVWEMTDP 87


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 95  FYEPICFCENNEYGCYFFVICDCLKKSKINDAATSGNLHS 214
           FY+P  FC   +   + ++  + ++   INDA +   L S
Sbjct: 57  FYKPFLFCCAKKIERHIYISLNSIQLLAINDALSPDILES 96


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 145 EITSIFVVFTKTDWFIEEHHRFYNELHST*HISLE 41
           ++ S+F+   K DW+      F + L S   +SL+
Sbjct: 119 KLASVFIEIAKRDWYNTWREEFDSFLQSLWSLSLQ 153


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 287 AYIFQIKYRKDIFYSSVPFIRIGIHCVSSPTSQHRLFYF 171
           A + Q+  R+D + S  P        V SP+S  RL YF
Sbjct: 560 AAVCQVSLREDYWKSPHPIPPSSYSFVESPSSILRLDYF 598


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 276 SDKIQEGHFLF*CPFYPDRHS 214
           SD+I+E ++     F+PDRH+
Sbjct: 21  SDQIKESYYRLSRLFHPDRHT 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,488
Number of Sequences: 5004
Number of extensions: 32802
Number of successful extensions: 80
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)