Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0084
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 29 1.3
06_03_1445 - 30209354-30209396,30209798-30209875,30210220-302102... 28 3.0
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 27 3.9
06_03_1433 - 30129184-30129226,30129628-30129705,30130050-301301... 27 3.9
06_03_1416 + 30027066-30027663,30027739-30027848,30027927-300280... 27 3.9
10_08_0624 - 19345114-19346673 27 5.2
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106... 27 6.9
04_03_0359 - 14864750-14864998,14865122-14865345,14867358-148674... 26 9.1
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 179 INDAATSGNLHSE-CRSG*KGH*NKKCPSCILSEKYRQGRLKGDDCGSDAGAG 334
+ +A+ +G++ S C SG G C + E + G +K CGS G G
Sbjct: 810 VMEASKAGHVKSGGCGSGCGGGCGGGCGGGVAMESSKAGHVKSGGCGSGCGGG 862
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 218 CRSG*KGH*NKKCPSCILSEKYRQGRLKGDDCGSDAGAG 334
C SG G C ++ E + G +K CGS G G
Sbjct: 793 CGSGCGGGCGGGCGGGMVMEASKAGHVKSGGCGSGCGGG 831
>06_03_1445 -
30209354-30209396,30209798-30209875,30210220-30210285,
30212275-30212322,30212408-30212571,30212726-30213581,
30213673-30213786,30213853-30213996,30214075-30214304,
30214584-30214724,30214810-30214887,30214972-30215053,
30215130-30215184,30215284-30215407,30215548-30215641,
30215718-30215794,30215873-30215982,30216058-30216655
Length = 1033
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 227 RIGIHCVSSPTSQHRLFYFFSDSHISQRNNIHIRCF 120
+ G+H + + T +LF FF + H + H R F
Sbjct: 351 QFGLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFF 386
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 27.5 bits (58), Expect = 3.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 356 HFLRPVRALPRRRYHSRHL*AVLAYIFQIKYRKDIFYSSVPFIRIGIHCVS-SPTSQH 186
H + ++ R+ Y R +L +Y FY+ P +RIG+ V+ SPT+ +
Sbjct: 220 HCFQGLQEQNRQWYDGRQGGRILGVRCNFRYESYQFYAGTPDVRIGLQDVAPSPTANN 277
>06_03_1433 -
30129184-30129226,30129628-30129705,30130050-30130115,
30132105-30132152,30132238-30132401,30132556-30133411,
30133503-30133616,30133683-30133826,30133905-30134134,
30134414-30134554,30134640-30134717,30134802-30134883,
30134958-30135012,30135112-30135235,30135376-30135469,
30135546-30135622,30135701-30135810,30135886-30136483
Length = 1033
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 221 GIHCVSSPTSQHRLFYFFSDSHISQRNNIHIRCF 120
G+H + + T +LF FF + H + H R F
Sbjct: 353 GLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFF 386
>06_03_1416 +
30027066-30027663,30027739-30027848,30027927-30028003,
30028080-30028173,30028314-30028437,30028537-30028591,
30028666-30028747,30028832-30028909,30028995-30029135,
30029416-30029645,30029724-30029867,30029934-30030047,
30030139-30030994,30031149-30031312,30031398-30031445,
30033435-30033500,30033845-30033922,30034324-30034366
Length = 1033
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 221 GIHCVSSPTSQHRLFYFFSDSHISQRNNIHIRCF 120
G+H + + T +LF FF + H + H R F
Sbjct: 353 GLHTLKAATPDRKLFIFFQNEHFNVVYKYHGRFF 386
>10_08_0624 - 19345114-19346673
Length = 519
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 386 VADQFHVSIAHFLRPVRALPRR 321
VAD H S AH PVRA RR
Sbjct: 138 VADTLHPSRAHLFAPVRARVRR 159
>02_01_0151 +
1067067-1067222,1067586-1067690,1067904-1067990,
1068071-1068121,1068265-1068291,1068292-1068385,
1068610-1068845
Length = 251
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 84 DFIMNFIAHNTFLLNNVRCLIDMN 13
D + IAHNT +LNN+R + +N
Sbjct: 105 DVTLTDIAHNTEVLNNIRQVCGLN 128
>04_03_0359 -
14864750-14864998,14865122-14865345,14867358-14867475,
14867586-14867960,14869257-14869673
Length = 460
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 243 RIKNVLPVFYLKNIGKDGSKVTT 311
R++++LP+ N+G+DG K T+
Sbjct: 166 RVRDLLPIKLSANLGRDGHKETS 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,031,108
Number of Sequences: 37544
Number of extensions: 198553
Number of successful extensions: 422
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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