Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical ...    33   0.053
AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.      33   0.053
CU457741-2|CAM36343.1|  574|Caenorhabditis elegans Hypothetical ...    28   2.0  
Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical p...    27   4.6  
U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical p...    27   4.6  
L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen prote...    27   4.6  
AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical p...    27   6.1  
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    26   8.1  

>AL034393-5|CAA22311.1|  362|Caenorhabditis elegans Hypothetical
           protein Y18D10A.5 protein.
          Length = 362

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 288 KDGSKVTTVVATPG-QGPDRPQEVSYADMKLIGN 386
           K G +VT VVA+    G D+  E+SY D K+IGN
Sbjct: 11  KSGKQVTMVVASVATDGVDQQVEISYYDQKVIGN 44


>AF159950-1|AAD45354.1|  362|Caenorhabditis elegans GSK-3 protein.
          Length = 362

 Score = 33.5 bits (73), Expect = 0.053
 Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 288 KDGSKVTTVVATPG-QGPDRPQEVSYADMKLIGN 386
           K G +VT VVA+    G D+  E+SY D K+IGN
Sbjct: 11  KSGKQVTMVVASVATDGVDQQVEISYYDQKVIGN 44


>CU457741-2|CAM36343.1|  574|Caenorhabditis elegans Hypothetical
           protein C42C1.2 protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 282 IGKDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
           +  DGS+  +   TP     R QE++Y + +LIGN
Sbjct: 335 VTSDGSRALSKDLTPASERKRLQELAYRNPELIGN 369


>Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical
           protein F38B7.2b protein.
          Length = 228

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 166 QTVTYHKEI-TSIFVVFTKTDWFIEEHHRF 80
           +TVTYH +I T+ +  F KT  F EE H F
Sbjct: 25  RTVTYHADISTNFYPRFVKT-VFAEESHNF 53


>Z75536-1|CAE17805.1|  195|Caenorhabditis elegans Hypothetical
           protein F18C12.4 protein.
          Length = 195

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 21/62 (33%), Positives = 30/62 (48%)
 Frame = -1

Query: 199 RRRSIVYFTFFQTVTYHKEITSIFVVFTKTDWFIEEHHRFYNELHST*HISLE*CPLSDR 20
           RRR I +FT      ++KE  S FV   K  W  +    F+ + H T H+S     LS+ 
Sbjct: 98  RRRPIDHFTGLMHTPWNKEEESQFVEM-KDAWKSDSSRHFFYK-HWTNHVSTS-QKLSET 154

Query: 19  YE 14
           +E
Sbjct: 155 FE 156


>U88172-11|AAB42257.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK354.2a protein.
          Length = 390

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 197 TSQHRLFYFFSDSHISQRNNIHIRCFHKNRLVHRRTSP 84
           T++ R F   +  H++++    IR  H+N  +HR   P
Sbjct: 110 TNKDRKFSMATGLHLAEQTLTAIRDLHRNGFIHRDIKP 147


>U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical
           protein ZK354.2b protein.
          Length = 437

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 197 TSQHRLFYFFSDSHISQRNNIHIRCFHKNRLVHRRTSP 84
           T++ R F   +  H++++    IR  H+N  +HR   P
Sbjct: 110 TNKDRKFSMATGLHLAEQTLTAIRDLHRNGFIHRDIKP 147


>L23651-12|AAA27958.1|  305|Caenorhabditis elegans Collagen protein
           90 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 65  MKFIIKSVMFFYEPICFCENNEYGC 139
           M  I +S  F Y  +C C++N  GC
Sbjct: 69  MPSIFRSKRFVYPGMCNCDSNSQGC 93


>AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.9 protein.
          Length = 421

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 197 TSQHRLFYFFSDSHISQRNNIHIRCFHKNRLVHRRTSP 84
           T++ R F   +  H++++    IR  H+N  +HR   P
Sbjct: 110 TNKDRKFSMATGLHLAEQTLAAIRDLHRNGFIHRDIKP 147


>Z78201-4|CAB01590.2|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 290 LAYIFQIKYRKDIFYSSVPFIRIGIHCVSSPTSQHRLFY 174
           LA  ++ ++RKD+F + V F R G + +  PT    + Y
Sbjct: 401 LALAYRERFRKDVFINLVCFRRWGHNELDDPTFTSPVMY 439


>Z78019-10|CAE46691.1|  911|Caenorhabditis elegans Hypothetical
           protein ZK836.2 protein.
          Length = 911

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 290 LAYIFQIKYRKDIFYSSVPFIRIGIHCVSSPTSQHRLFY 174
           LA  ++ ++RKD+F + V F R G + +  PT    + Y
Sbjct: 401 LALAYRERFRKDVFINLVCFRRWGHNELDDPTFTSPVMY 439


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = -3

Query: 281 IFQIKYRKDIFYSSVPFIRIGIHCVSSPTSQHRLFYFFSDSHISQRNNIHIRCF 120
           + +I Y+K I+ +  P I     CVS   +  +   F    H+S+R   H++ +
Sbjct: 142 LVEIPYKKPIYIAPKPVI----FCVSPQFAAEQWQTFLVQLHVSKRYGAHLQLY 191


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
            protein protein 6 protein.
          Length = 1106

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 228  DKRDTRIKNVLPVFYLKNIGKDGSKVTTVVATPGQGPDRPQEVSYADMKLIGN 386
            +K D  +K       +K I    S   TV A+P Q P++P   +    K  G+
Sbjct: 877  EKLDDSVKEKEKEEMMKKIKPAESTTPTVKASPAQNPNKPNTPAQKQNKFNGS 929


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,094,141
Number of Sequences: 27780
Number of extensions: 193373
Number of successful extensions: 556
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)