Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0084
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           30   0.008
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   8.6  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 30.3 bits (65), Expect = 0.008
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 98  YEPICFCENNEYGC-YFFVICDCLK-KSKINDAATSGNLHSECRSG*KGH*NKKCPSC 265
           +EP+   EN E    +  V CD L  K ++ND+A + N HS  ++G  GH  K    C
Sbjct: 1   FEPLEHFENEERADRHRRVTCDLLSFKGQVNDSACAANCHSLGKAG--GHCEKGVCIC 56


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 202 PRRRSIVYFTFFQTVTYHKE 143
           PRRR    +T FQT+   KE
Sbjct: 7   PRRRGRQTYTRFQTLELEKE 26


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 TRIKNVLPVFYLKNIGKDGSKVTTVVATP 326
           +R K +LPV    N+ K+ S  +T   TP
Sbjct: 763 SRNKALLPVIKPANVNKEQSPNSTKETTP 791


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   NNAYSYLSDNGHYSREMCY 59
           +N Y+Y + N +  +++CY
Sbjct: 86  SNNYNYSNYNNNNYKQLCY 104


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   NNAYSYLSDNGHYSREMCY 59
           +N Y+Y + N +  +++CY
Sbjct: 86  SNNYNYSNYNNNNYKQLCY 104


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   NNAYSYLSDNGHYSREMCY 59
           +N Y+Y + N +  +++CY
Sbjct: 86  SNNYNYSNYNNNNYKQLCY 104


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   NNAYSYLSDNGHYSREMCY 59
           +N Y+Y + N +  +++CY
Sbjct: 86  SNNYNYSNYNNNNYKQLCY 104


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   NNAYSYLSDNGHYSREMCY 59
           +N Y+Y + N +  +++CY
Sbjct: 86  SNNYNYSNYNNNNYKQLCY 104


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 3   NNAYSYLSDNGHYSREMCY 59
           +N Y+Y + N +  +++CY
Sbjct: 86  SNNYNYSNYNNNNYKQLCY 104


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/32 (18%), Positives = 18/32 (56%)
 Frame = -3

Query: 176 YFFSDSHISQRNNIHIRCFHKNRLVHRRTSPI 81
           Y +++ +    NN + + ++KN +++    P+
Sbjct: 98  YNYNNKYNYNNNNYNKKLYYKNYIINIEQIPV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,601
Number of Sequences: 438
Number of extensions: 2353
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)