Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0083
         (415 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   2.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   3.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   3.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   3.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   6.3  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    20   8.3  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 316 WYRRT-VPILTY*RYKSTPPAMLVAATTNAMRNIHTSIVAERFLMM 182
           WY    VP+  Y  + +     +V +T N +  ++T I+ ERF ++
Sbjct: 19  WYTVCLVPLNPYQFFLAVQYPRIVVSTFNIVFYMYTLILEERFKLI 64


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 59  KHTLIHYDFNFNKY 18
           KHT  HY  N N Y
Sbjct: 299 KHTQQHYQMNQNMY 312


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 59  KHTLIHYDFNFNKY 18
           KHT  HY  N N Y
Sbjct: 247 KHTQQHYQMNQNMY 260


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 59  KHTLIHYDFNFNKY 18
           KHT  HY  N N Y
Sbjct: 430 KHTQQHYQMNQNMY 443


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 117 EAIADQLCEDELID 158
           EA AD+LCE+   D
Sbjct: 27  EATADELCENRPAD 40


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 117 EAIADQLCEDELID 158
           EA AD+LCE+   D
Sbjct: 27  EATADELCENRPAD 40


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 252 WSRPPLTP 229
           W+RPP TP
Sbjct: 412 WARPPSTP 419


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 111 KPEAIADQLCEDELIDMHNIEGPYIMRKRSA 203
           +P+ +  Q  ++ +  M+N+ G Y M   SA
Sbjct: 314 QPDYLNSQTTQNHMQAMNNMAGTYQMTGYSA 344


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,499
Number of Sequences: 336
Number of extensions: 2030
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9068614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)