Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0083
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    27   1.2  
SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit L51...    25   3.5  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    25   4.7  

>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 212 SVYVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPGLLYH 331
           S Y PHGV+ G +      A + ++R   H +  P L  H
Sbjct: 215 SAYAPHGVNMGTNMGANMGANMNAIRGGLHSSISPNLGDH 254


>SPBC2G2.07c |mug178||mitochondrial ribosomal protein subunit
           L51-b|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 225

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 177 PYIMRKRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTIPISTRDSQ 356
           P+   K +     C+F ++ V+AATS+ G      +YV I ++   +   TIP  TR+++
Sbjct: 165 PFTYGKFAPDSKECLFGVSGVIAATSLKGITSTKNRYV-IRSLNVDETGKTIPNITRENR 223


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 230 GVSGGRDQHCRWRALVPSVRENRHRTTIP 316
           G SGG D  C+W  L    R   H+   P
Sbjct: 73  GASGGADTECKWAELNMIERRCPHQVGKP 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,531
Number of Sequences: 5004
Number of extensions: 31583
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)