Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0083
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148...    29   1.5  
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949...    27   4.5  
11_01_0770 - 6447739-6448158                                           27   5.9  
04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846     27   5.9  

>06_01_0191 +
           1478267-1478929,1480579-1480789,1482625-1482925,
           1483217-1483612,1483993-1484070,1484166-1484373
          Length = 618

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 194 LPHDVRALDVVHIDQLIFT*LVGNGLRLVSVETGLRENGH 75
           LP+  RA D+ H  + +      NGL ++ V+  LR  G+
Sbjct: 269 LPYPARAFDMAHCSRCLIPWSKYNGLYMIEVDRVLRPGGY 308


>04_03_0539 +
           16892822-16892900,16894004-16894107,16894718-16894917,
           16896078-16896178,16897546-16897735,16898377-16898458,
           16899374-16899501,16899846-16900026
          Length = 354

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -3

Query: 182 VRALDVVHIDQLIFT*LVGNGLRLVSVE---TGLRENGHDKI-IIKHTLIHYDFNFNKYS 15
           VRA D +  ++ + T +VGNGL  V  E    G      +KI  +   + H +F    Y 
Sbjct: 46  VRAPDAIAAEERVLTEVVGNGLFDVLREQYGAGFHSFIKEKIYALPGDVTHENFGLESYD 105

Query: 14  VLQ 6
           +LQ
Sbjct: 106 ILQ 108


>11_01_0770 - 6447739-6448158
          Length = 139

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 197 FRYYASVYVPHGVSGGRDQHCRWRALV 277
           +R + S  V  GV GG D+  RWR  V
Sbjct: 23  WRQWGSDLVEDGVGGGEDRWRRWRGTV 49


>04_04_1063 - 30507734-30508127,30508248-30508447,30508559-30508846
          Length = 293

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 195 RSATMLVCMFLMALVVAATSIAGGVLLYRQ 284
           R+  +L C+   AL+ AAT + GG L+  Q
Sbjct: 5   RAHHLLACLLASALLAAATPVTGGGLMTDQ 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,380,608
Number of Sequences: 37544
Number of extensions: 229134
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)