Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0083
(415 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT016099-1|AAV36984.1| 319|Drosophila melanogaster LD27268p pro... 35 0.049
AY069416-1|AAL39561.1| 269|Drosophila melanogaster LD11211p pro... 35 0.049
AE014134-159|ABC65865.1| 269|Drosophila melanogaster CG3662-PB,... 35 0.049
AE014134-158|AAF51452.1| 319|Drosophila melanogaster CG3662-PA,... 35 0.049
DQ831954-1|ABJ09069.1| 1223|Drosophila melanogaster SnoN protein. 29 1.8
DQ831953-1|ABJ09068.1| 1223|Drosophila melanogaster SnoN protein. 29 1.8
DQ831952-1|ABJ09067.1| 1223|Drosophila melanogaster SnoN protein. 29 1.8
DQ831951-1|ABJ09066.1| 958|Drosophila melanogaster SnoN2 protein. 29 1.8
AY069677-1|AAL39822.1| 442|Drosophila melanogaster LD45245p pro... 29 3.2
AE014297-1536|AAF54827.1| 442|Drosophila melanogaster CG5961-PA... 29 3.2
AM282581-1|CAK54357.1| 1011|Drosophila melanogaster dSki protein... 28 4.3
BT025088-1|ABE73259.1| 1074|Drosophila melanogaster IP14091p pro... 28 5.6
AE013599-3695|AAF47069.1| 1201|Drosophila melanogaster CG5549-PA... 28 5.6
>BT016099-1|AAV36984.1| 319|Drosophila melanogaster LD27268p
protein.
Length = 319
Score = 34.7 bits (76), Expect = 0.049
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 219 MFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTIP 335
+FL+A+VV + GG LYR Y + RY C IP
Sbjct: 66 LFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHALCEIP 104
>AY069416-1|AAL39561.1| 269|Drosophila melanogaster LD11211p
protein.
Length = 269
Score = 34.7 bits (76), Expect = 0.049
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 219 MFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTIP 335
+FL+A+VV + GG LYR Y + RY C IP
Sbjct: 16 LFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHALCEIP 54
>AE014134-159|ABC65865.1| 269|Drosophila melanogaster CG3662-PB,
isoform B protein.
Length = 269
Score = 34.7 bits (76), Expect = 0.049
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 219 MFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTIP 335
+FL+A+VV + GG LYR Y + RY C IP
Sbjct: 16 LFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHALCEIP 54
>AE014134-158|AAF51452.1| 319|Drosophila melanogaster CG3662-PA,
isoform A protein.
Length = 319
Score = 34.7 bits (76), Expect = 0.049
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 219 MFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTIP 335
+FL+A+VV + GG LYR Y + RY C IP
Sbjct: 66 LFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHALCEIP 104
>DQ831954-1|ABJ09069.1| 1223|Drosophila melanogaster SnoN protein.
Length = 1223
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 102 NAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLV 215
N K + I DQL E EL +MH + +KR A ML+
Sbjct: 302 NREKYQIILDQLKEVELKEMHKAQRELEHKKRKAEMLM 339
>DQ831953-1|ABJ09068.1| 1223|Drosophila melanogaster SnoN protein.
Length = 1223
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 102 NAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLV 215
N K + I DQL E EL +MH + +KR A ML+
Sbjct: 302 NREKYQIILDQLKEVELKEMHKAQRELEHKKRKAEMLM 339
>DQ831952-1|ABJ09067.1| 1223|Drosophila melanogaster SnoN protein.
Length = 1223
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 102 NAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLV 215
N K + I DQL E EL +MH + +KR A ML+
Sbjct: 302 NREKYQIILDQLKEVELKEMHKAQRELEHKKRKAEMLM 339
>DQ831951-1|ABJ09066.1| 958|Drosophila melanogaster SnoN2 protein.
Length = 958
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 102 NAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLV 215
N K + I DQL E EL +MH + +KR A ML+
Sbjct: 302 NREKYQIILDQLKEVELKEMHKAQRELEHKKRKAEMLM 339
>AY069677-1|AAL39822.1| 442|Drosophila melanogaster LD45245p
protein.
Length = 442
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 410 IRLVGPTKRHCAE-VWFH*LRVPSRN 336
+R+ G TKR CA+ VW H V RN
Sbjct: 382 LRIAGTTKRRCAQLVWSHYTLVQKRN 407
>AE014297-1536|AAF54827.1| 442|Drosophila melanogaster CG5961-PA
protein.
Length = 442
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 410 IRLVGPTKRHCAE-VWFH*LRVPSRN 336
+R+ G TKR CA+ VW H V RN
Sbjct: 382 LRIAGTTKRRCAQLVWSHYTLVQKRN 407
>AM282581-1|CAK54357.1| 1011|Drosophila melanogaster dSki protein
long isoform protein.
Length = 1011
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 102 NAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLV 215
N K + I DQL E EL +MH + +KR A ML+
Sbjct: 295 NRVKYQIILDQLKEVELKEMHKAQRELEHKKRKAEMLM 332
>BT025088-1|ABE73259.1| 1074|Drosophila melanogaster IP14091p
protein.
Length = 1074
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 177 PYIMRKRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTI 332
PY+ + F + LV+A + L + QY +G V Y+ +C +
Sbjct: 84 PYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSFGQYAALGPVAVYRRFCPL 135
>AE013599-3695|AAF47069.1| 1201|Drosophila melanogaster CG5549-PA
protein.
Length = 1201
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +3
Query: 177 PYIMRKRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGYCTI 332
PY+ + F + LV+A + L + QY +G V Y+ +C +
Sbjct: 84 PYLCYNNGGGAFLIPFTIMLVIAGLPLMFMELSFGQYAALGPVAVYRRFCPL 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,025,588
Number of Sequences: 53049
Number of extensions: 386650
Number of successful extensions: 976
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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