Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0083
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 3.1
U70852-15|AAK29824.1| 543|Caenorhabditis elegans Hypothetical p... 28 3.1
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 3.1
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 3.1
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 3.1
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z71178-12|CAD44086.1| 342|Caenorhabditis elegans Hypothetical p... 26 9.4
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>U70852-15|AAK29824.1| 543|Caenorhabditis elegans Hypothetical
protein F45E4.11 protein.
Length = 543
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 93 PSLNAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLVCMFLMALVVAATSIA 260
PS N AD +DE H++ P MR A ML C F+ L ++++++A
Sbjct: 36 PSTNNGSTSMAADDQSQDEEHSAHSVLFP-SMRLMLAAMLCCCFI-TLSISSSNLA 89
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGM 842
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 188 EEAFRYYASVYVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPG 319
E+ FR YAS+++ H G D H + VP RE +R + G
Sbjct: 1339 EKVFRAYASLFMRHLCEPGADGHDTFNDGVP--REGLNRQHVLG 1380
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGM 842
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 188 EEAFRYYASVYVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPG 319
E+ FR YAS+++ H G D H + VP RE +R + G
Sbjct: 1339 EKVFRAYASLFMRHLCEPGADGHDTFNDGVP--REGLNRQHVLG 1380
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
protein H05G16.1 protein.
Length = 1111
Score = 26.6 bits (56), Expect = 7.1
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 88 RSPVSTLTSLRPLPTNYVKMS*SICTTSRALTS*GSV 198
RSP +T T+ R Y + ++ TTS+ LTS G+V
Sbjct: 659 RSPAATTTTTR----TYANTTTTVTTTSKVLTSSGAV 691
>Z49072-4|CAA88882.4| 414|Caenorhabditis elegans Hypothetical
protein T24A11.3 protein.
Length = 414
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 242 GRDQHCRWRALVPSVRENRHR 304
GRD HC WR VP R R
Sbjct: 326 GRDVHCYWRISVPEGSRVRFR 346
>Z46787-3|CAA86741.1| 1032|Caenorhabditis elegans Hypothetical
protein C16C10.3 protein.
Length = 1032
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 173 GPLHHEEAFRYYASVYVPHGVSGGRDQ 253
G HH A+ A++Y+P GV G DQ
Sbjct: 134 GKSHHFLAYDCAATLYLPEGVYTGDDQ 160
>Z71178-12|CAD44086.1| 342|Caenorhabditis elegans Hypothetical
protein B0024.15 protein.
Length = 342
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 278 PSVRENRHRTTIPGLLYHTHFY 343
P VRE +HR +P LY F+
Sbjct: 219 PPVREKKHRWYVPKTLYSEKFF 240
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,485,707
Number of Sequences: 27780
Number of extensions: 185305
Number of successful extensions: 376
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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