Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0083
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   4.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.2  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 350  VPSRNGYGTVTLVSSYGADSHVLTVQEH 267
            VP  N   T T VSS  ++ H   + EH
Sbjct: 1306 VPGNNLIATNTTVSSGSSEDHRRPLSEH 1333


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 79  PFSRSPVSTLTSLRPLP 129
           PF++ P+  L   +PLP
Sbjct: 66  PFAKPPIGPLRFRKPLP 82


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 79  PFSRSPVSTLTSLRPLP 129
           PF++ P+  L   +PLP
Sbjct: 66  PFAKPPIGPLRFRKPLP 82


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 339 KWVWYSNPGIVVRCRFSRTDGTRARHLQCWSR 244
           KW+  ++    +RC   R  G   R+  C  R
Sbjct: 72  KWLSINHSACAIRCLAQRRKGGSCRNGVCICR 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,780
Number of Sequences: 438
Number of extensions: 2682
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)