Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0082
(682 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 29 0.047
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 22 4.0
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 22 4.0
EF592537-1|ABQ95983.1| 593|Tribolium castaneum beta-N-acetylglu... 22 5.3
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 22 5.3
AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein p... 22 5.3
EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine vasopre... 21 7.1
AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle pr... 21 9.3
AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head orthol... 21 9.3
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 28.7 bits (61), Expect = 0.047
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 324 YAHTPGTTIELTCEAAGSPAPSVHWFKND 410
+++T G +E C A G+P P + W ++D
Sbjct: 35 FSNTTGAVVE--CSAHGNPTPDIIWVRSD 61
Score = 28.7 bits (61), Expect = 0.047
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 336 PGTTIELTCEAAGSPAPSVHW 398
PG ++ L C A+G+P P + W
Sbjct: 427 PGNSVFLKCIASGNPTPEITW 447
Score = 27.1 bits (57), Expect = 0.14
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 348 IELTCEAAGSPAPSVHWFK 404
+ L C A G P+PS W+K
Sbjct: 250 VALLCPAQGFPSPSFRWYK 268
Score = 25.4 bits (53), Expect = 0.43
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +3
Query: 339 GTTIELTCEAAGSPAPSVHWFKNDSPV 419
G TC G+P ++ W K+ P+
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPI 368
Score = 22.6 bits (46), Expect = 3.1
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +3
Query: 327 AHTPGTTIELTCEAAGSPAPSVHW 398
A G+ + C+A G P P V W
Sbjct: 709 AFAQGSDAAVECKADGFPRPVVTW 732
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 339 GTTIELTCEAAGSPAPSVHW 398
G T+ + C AG P SV W
Sbjct: 525 GGTLIVHCPFAGHPVDSVVW 544
Score = 21.0 bits (42), Expect = 9.3
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = +3
Query: 348 IELTCEAAGSPAPSVHW 398
+ L C A G P P + W
Sbjct: 1324 VTLPCLAVGLPPPVITW 1340
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 22.2 bits (45), Expect = 4.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 343 VPGVCAYDGRGPCVIDKYL 287
VPGV A R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 22.2 bits (45), Expect = 4.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 343 VPGVCAYDGRGPCVIDKYL 287
VPGV A R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215
>EF592537-1|ABQ95983.1| 593|Tribolium castaneum
beta-N-acetylglucosaminidase NAG2 protein.
Length = 593
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 462 PTSIARISSTLI 497
PTS+ +ISSTL+
Sbjct: 75 PTSVTKISSTLL 86
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 21.8 bits (44), Expect = 5.3
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +3
Query: 249 IENGVQAKSDGSH--KYLSITQGPLPSYAHTPGTTIELTCEAA 371
I+ G +A +G + KYL + + Y H P T E AA
Sbjct: 429 IKFGRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAA 471
>AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein
protein.
Length = 287
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 213 KHIKLLSDIDNSIENGVQAKSDGSHKYLSITQGPLPS 323
K I+ S IDN NG + H+ + P P+
Sbjct: 218 KRIEEKSQIDNLFHNGFMQEQSTHHQGQLVVGLPAPT 254
>EF222296-1|ABN79656.2| 403|Tribolium castaneum arginine
vasopressin receptor protein.
Length = 403
Score = 21.4 bits (43), Expect = 7.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -2
Query: 591 YLYCRPQCWLAQSWSSW 541
Y+ C LAQ W++W
Sbjct: 273 YIACSTPFILAQLWATW 289
>AJ518940-1|CAD57734.1| 361|Tribolium castaneum extradenticle
protein.
Length = 361
Score = 21.0 bits (42), Expect = 9.3
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2
Query: 497 SDAYDLSGCVHLPRH 541
S AYD S C + P H
Sbjct: 341 SSAYDASSCGYDPMH 355
>AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head
orthologue protein.
Length = 431
Score = 21.0 bits (42), Expect = 9.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 285 HKYLSITQGPLPSYAHTPGT 344
H+Y T PLPS H+ T
Sbjct: 392 HQYGYNTLSPLPSSVHSHST 411
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,622
Number of Sequences: 336
Number of extensions: 2755
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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