Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0082
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0164 + 15265878-15268701,15268782-15269200                       30   2.0  
07_03_1769 + 29377784-29377878,29377993-29378180,29378340-293784...    29   4.5  
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726...    29   4.5  
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964...    28   7.9  

>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 396 WFKNDSPVYEYDVESNELIDSSPTSI 473
           W  N + +Y  DVE+N L D  PTSI
Sbjct: 307 WLANCTILYLLDVENNSLADDLPTSI 332


>07_03_1769 +
           29377784-29377878,29377993-29378180,29378340-29378472,
           29378580-29378715,29378996-29379072,29379162-29380830,
           29380935-29381018,29381120-29381224,29381302-29381358
          Length = 847

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 372 GSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQD 521
           GSP P +H F+N++   E ++ SN   +SS      I ++   T + S++
Sbjct: 233 GSPMPQMHNFQNETSSSELNISSNCSPESSIKVTQDIGASTTGTDSVSEE 282


>01_01_0920 +
           7264498-7264573,7264705-7264745,7265339-7265408,
           7265500-7265648,7266143-7266238,7266326-7266396,
           7266510-7266571,7266651-7266714,7267608-7267692,
           7267777-7267903,7268016-7268080,7268739-7268796,
           7268927-7269066,7269624-7269693,7269910-7269981,
           7270188-7270234,7270468-7270566
          Length = 463

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 297 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSPVYE 425
           S  +GP P+  HT   T ++T     A S  P   W K+   +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397


>01_01_1198 -
           9643469-9643585,9643740-9643805,9643905-9644489,
           9645159-9645994,9646597-9646783,9647572-9647737,
           9648431-9648520,9649122-9649184,9649277-9649413,
           9649835-9650349,9651130-9651231,9651581-9651602
          Length = 961

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
 Frame = +3

Query: 249 IENGVQAKSDGSHKYLSITQGPLPS-----------YAHTPGTTIELTCEAAGSPAPSVH 395
           I NG+    DG   +LSIT G L             + H PG  +    +A  +   +V 
Sbjct: 249 IRNGI-VSYDGRKLFLSITNGSLVEVTELQPLRWTYHGHPPGGDVSYISDAGNARPGTVF 307

Query: 396 WFKNDSPVYEYDVES 440
              +   +YE+D ES
Sbjct: 308 TVSSTGDLYEFDRES 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,377,510
Number of Sequences: 37544
Number of extensions: 313855
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)