Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0082
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21630.1 68415.m02573 transport protein, putative similar to ...    31   0.93 
At3g53930.1 68416.m05958 protein kinase family protein contains ...    28   5.0  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    27   8.7  
At3g42850.1 68416.m04489 galactokinase, putative contains some s...    27   8.7  
At1g13810.1 68414.m01621 expressed protein ; expression supporte...    27   8.7  

>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 291 YLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDS 413
           Y S+    LP       TT+E  C++  SP+P V  F  D+
Sbjct: 95  YSSVADNNLPPELFPHSTTVEYLCDSFSSPSPPVFLFVVDT 135


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +3

Query: 324 YAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIARISSTLIVT 503
           Y    G  +++   ++GSP P  + FK+ SP  E+ ++ N    ++P  IA  +   + +
Sbjct: 421 YVLISGPPVDIPSSSSGSPKPFNYPFKSHSPPVEF-IKRNVTNLTAPMPIASATGNNL-S 478

Query: 504 RTTSQDVYTCL 536
           R  S +   C+
Sbjct: 479 RFGSLESQNCI 489


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 DAYDLSGCVHLPRHHELQD 556
           D YDL G V +P+HH+  D
Sbjct: 388 DKYDLYGQVAMPKHHQQSD 406


>At3g42850.1 68416.m04489 galactokinase, putative contains some
           similarity to galactokinase [Pasteurella multocida]
           SWISS-PROT:P57899
          Length = 964

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 75  LRIDFAKKEFFLRESHQYYRAVVRMHLVLLFTVAALLGSCQSAHLNKHIKLLSDIDNSIE 254
           +R D+  +E FLR+  +YY+  V M          LL  C + +L + + L    D  I+
Sbjct: 304 VRRDYFNEEPFLRKMLEYYQGGVEM------IRRDLLAGCWAPYLERAVTLKPCYDGGID 357

Query: 255 NG-VQAK 272
            G V AK
Sbjct: 358 GGEVAAK 364


>At1g13810.1 68414.m01621 expressed protein ; expression supported
           by MPSS
          Length = 303

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 184 WARASPPI*INTLSCFRTSITVLRMVCKQNLMDLINIYRSRKAPY 318
           W  ASP   IN +    TS  VL + C  +  D   +Y  +K PY
Sbjct: 146 WLGASPDGVINVVKDGVTSCGVLEVKCPFDNRDNSKVYPWKKVPY 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,424
Number of Sequences: 28952
Number of extensions: 241824
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)