Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0081
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 49 3e-06
04_03_0649 - 18402976-18403220,18403305-18404499 43 2e-04
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 34 0.11
10_08_0009 + 14075929-14076789 31 0.61
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 31 0.81
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 2.5
03_01_0436 + 3384526-3385236,3387857-3388720 28 5.7
04_01_0192 - 2245794-2246186,2246699-2247490 28 7.5
12_02_0445 - 19153580-19154269 27 9.9
03_04_0058 - 16915281-16915313,16915424-16915535,16915585-169169... 27 9.9
01_07_0025 + 40565296-40565497,40565591-40566075 27 9.9
01_06_0673 + 31089846-31090132,31090258-31090453 27 9.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = +2
Query: 305 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTVFINSGVLLAEQYGFDG 472
+S+K+ G V +LS+G D E+ ++ + + R FINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 473 IDLAWQFP 496
+DLAW+FP
Sbjct: 158 LDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Frame = +2
Query: 134 YVRESQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSL 313
Y + A + PL A S THL Y + P L+ + D RA+
Sbjct: 45 YYLAADAHLRPLAALDA-SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV--- 100
Query: 314 KAKYPGLTVLLSVGGD---------ADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGF 466
KAK + +LS+G A + + + +R FI + V +A + GF
Sbjct: 101 KAKNAAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGF 160
Query: 467 DGIDLAWQFP 496
DG+D+AW+FP
Sbjct: 161 DGLDVAWRFP 170
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 164 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 307
PL+LDP H+L Y + TY LV + +D HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725
>10_08_0009 + 14075929-14076789
Length = 286
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Frame = +2
Query: 299 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTVFINSGVL----LAEQYGF 466
A+ + KA +P L+V+L++GGD T + N + ++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 467 DGIDLAWQ 490
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 31.1 bits (67), Expect = 0.81
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +2
Query: 356 GDADTEEPEKYNLLLESQQARTVFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWGS 535
G + TE Y A +I SG ++ Q G D + W+ + + + W
Sbjct: 431 GGSPTELITSYTESTGRPPALPRWITSGAVVGMQGGTDAVRRVWKQLQDHDVPVSAFWLQ 490
Query: 536 LWHGIKKTFGTTPV---DEKESEHREGFTALVRELKQ 637
W G +KT + + E + +H G+ LVR+L++
Sbjct: 491 DWVGQRKTSIGSQLWWNWEVDDDHYAGWNDLVRDLRR 527
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Frame = -1
Query: 586 LLIDWRGAECLLNSMPKRSPGRA---DLLRLNSWELPGEVNSIETILFSQQHSGINEN 422
LL D R + L++ KR+ G D+ RLNSW L V S+ + Q+ S ++E+
Sbjct: 1503 LLPDLRSKQLLVHFFLKRTVGNLSDDDVARLNSWALGLRVLSLLPLPSQQRCSSLHEH 1560
>03_01_0436 + 3384526-3385236,3387857-3388720
Length = 524
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 182 ALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYR--AITSLKAKYPGLTVLLS 349
A+ HLL +A +TY LV EN+ ++ NYR +T+ + G VLLS
Sbjct: 228 AIDLAKHLLQVHA----ETYALVVSTENITLNAYMGNYRPMLVTNTLFRMGGAAVLLS 281
>04_01_0192 - 2245794-2246186,2246699-2247490
Length = 394
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -1
Query: 550 NSMPKRSPG-RADLLRLNSWELPGEVNSIETILFSQQHSGINENSTGLLRFQQKV--IFF 380
+S P R+ + +LR G+ NSI TIL HS G+ Q++ +F+
Sbjct: 116 DSDPNRTYSLESGILRYKGRIYVGDSNSIRTILLQDYHSSAFGRHLGIRATYQRIKGLFY 175
Query: 379 W 377
W
Sbjct: 176 W 176
>12_02_0445 - 19153580-19154269
Length = 229
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -1
Query: 217 IAVQQVGAERQSGIEVQRQHAG 152
+ V+++ A R+ G+EVQR HAG
Sbjct: 107 VEVRELLARRRLGVEVQRVHAG 128
>03_04_0058 -
16915281-16915313,16915424-16915535,16915585-16916990,
16919112-16919282
Length = 573
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 91 GNPQQSTLLLRQQELCQRISSPHAAVGPRSRSVVLHPLAVRLCR 222
GN Q + L Q CQR+ S A G HP+ RL R
Sbjct: 105 GNLQLAWELSSQIRNCQRLLSEEAVSGKAITKEEAHPIITRLAR 148
>01_07_0025 + 40565296-40565497,40565591-40566075
Length = 228
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 586 LLIDWRGAECLLNSMPKRSPGRADLLRLNSWELPGE 479
LL+ + + + +P ADL RL+ W+LPGE
Sbjct: 34 LLLHYLRRKVMSRPLPADVIPVADLARLHPWDLPGE 69
>01_06_0673 + 31089846-31090132,31090258-31090453
Length = 160
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 299 HGSCRVFGLCPGSRLRTPAYRCQAGYRHSRTASGC 195
HG+ R+ GL P + + R RT+SGC
Sbjct: 58 HGTTRIHGLGPSRDVELLHWPISQALRERRTSSGC 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,646,582
Number of Sequences: 37544
Number of extensions: 392902
Number of successful extensions: 1200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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