Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0078
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    28   1.6  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    26   6.4  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   6.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 153 RVEAKNFRIFLVHTPNRTYYLEDPDSYALEWERVIDE 263
           R+   N   ++V TP +++  EDP+  A  W  ++D+
Sbjct: 531 RMVKNNEHGWVVETPTKSWSFEDPNGPASAWVELLDK 567


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 94  NSRGPVVRSSIRRLGNRPFRLST 26
           NS  PV +S   ++ +RPFRL T
Sbjct: 381 NSTSPVKQSGAAKVDSRPFRLVT 403


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 132 IPWSPELRVEAKNFRIFLVHTPNRTYYLED--PDSYALEWERVIDE 263
           IPW  +   + KNFR++ +HT + +    D  P+  +L+  +V  E
Sbjct: 70  IPWGNKAIGKRKNFRLYRLHTYSLSCNHSDWSPEELSLDTVQVAAE 115


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 300 MPALPQTRAEPATLPRPSGPAFYH 371
           +PA+ +T   P+ +P   GP  YH
Sbjct: 121 LPAVGKTNTFPSQVPNMFGPPLYH 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,413
Number of Sequences: 5004
Number of extensions: 61708
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)