Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0078
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1508 - 37847007-37847099,37847176-37847398,37847547-378477...    54   2e-07
03_01_0379 + 2946605-2946684,2946798-2946944,2947420-2947488,294...    32   0.55 
02_01_0302 - 2021221-2023305                                           31   0.72 
09_04_0418 - 17406313-17407419                                         28   6.7  
10_08_0921 + 21586034-21586229,21586464-21586576,21586768-215868...    28   8.9  

>01_06_1508 -
           37847007-37847099,37847176-37847398,37847547-37847713,
           37847791-37847925,37848225-37848390,37849170-37849248,
           37849332-37849437,37849522-37849623,37849661-37849761,
           37849888-37850068,37850174-37850365
          Length = 514

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
 Frame = +3

Query: 54  RRRMLLLTTGPRLFYVDPANMILKGEIPWS---PELRVEAKNFRIFLVHTPNRTYYLEDP 224
           ++  L+LT  P+L  VDP  M+ KG I WS    EL V+  N   F + TP +    ED 
Sbjct: 435 KKVQLILTDKPQLICVDPGKMVTKGNIMWSDDPSELNVQVSNSSHFRICTPKKVSSFEDA 494

Query: 225 DSYALEWERVIDEVR 269
              A +W++ I++++
Sbjct: 495 KQRAWQWKKAIEDLQ 509


>03_01_0379 +
           2946605-2946684,2946798-2946944,2947420-2947488,
           2947608-2947773,2947889-2948117,2948206-2948645,
           2949155-2949702,2949739-2949760
          Length = 566

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = -2

Query: 576 DPVYETCGAGVSSCALEQMWRRPRLTTRRATDASVRRSY*PNILLSDVGHARSQG 412
           DP YE   A +   A E+ WR  RL T       +++S  P+IL   V H    G
Sbjct: 337 DPGYEAVKAALEKYAEERRWRGIRLITAAYVVGFIQQSTNPSILCECVQHMDLSG 391


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 312 PQTRAEPATLPRPSGPAFYHSTPLVECA--HIGNCSLGFEHGQHPIIICSVSTTS*PKHP 485
           P + + P+T P PSGP+F+       C+    G+ + G   G HP    +      P  P
Sbjct: 618 PPSHSHPSTPPSPSGPSFHPPPTPHNCSPPSHGSSTGGGHGGGHPPSTSTPPGGKLPFPP 677

Query: 486 LHGAS*AA 509
           ++G S A+
Sbjct: 678 VYGVSYAS 685


>09_04_0418 - 17406313-17407419
          Length = 368

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 568 VRNVRRGRLILRSGTNVAPPAAHDAPCNGCFGQEVVL 458
           +R  + GR+    GT   PP+    P NG   ++VVL
Sbjct: 63  LRMYKDGRVERFDGTQTVPPSPSGDPANGVVSKDVVL 99


>10_08_0921 +
           21586034-21586229,21586464-21586576,21586768-21586875,
           21586967-21587205,21587301-21587399,21587448-21587535,
           21587617-21587750,21588274-21588362,21588718-21588751,
           21588830-21588898,21589216-21589339
          Length = 430

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 580 IGSGVRNVRRGRLILRSGTNVAPPAAHDAPCNGC 479
           +GS    +R GR +LRSG +V P      P N C
Sbjct: 356 VGSEKAALRAGRDMLRSGFHVTPIRPPTVPPNSC 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,598,311
Number of Sequences: 37544
Number of extensions: 443618
Number of successful extensions: 1277
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)