Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0078
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   9.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 63  MLLLTTGPRLFYVDPANMILKGEIPWSPELRVEAKNFRIFLVHT 194
           M++   G R FY D   +ILK  I     L  +  N  + L+ T
Sbjct: 646 MIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILIST 689


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 63  MLLLTTGPRLFYVDPANMILKGEIPWSPELRVEAKNFRIFLVHT 194
           M++   G R FY D   +ILK  I     L  +  N  + L+ T
Sbjct: 736 MIIEPPGTRFFYPDRKQVILKCNIQDMSFLFSQLYNALLILIST 779


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 357 PAFYHSTPLVECAHIGNCSLGFEHGQHP 440
           P   HSTPL   ++     +G     HP
Sbjct: 440 PHHQHSTPLAHSSYPAAIQIGHTPHHHP 467


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -3

Query: 626 NIHSDSSLEHVVASLNRIRC 567
           ++HSD  +E ++ +  R+ C
Sbjct: 200 SLHSDMPIERILEAEKRVEC 219


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -3

Query: 626 NIHSDSSLEHVVASLNRIRC 567
           ++HSD  +E ++ +  R+ C
Sbjct: 200 SLHSDMPIERILEAEKRVEC 219


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = -2

Query: 72  EAASGAWETGPFAC 31
           +   G WE GP  C
Sbjct: 98  QLTGGTWELGPMLC 111


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 595  TCSNDESLWILID*FLLTFSNDIPTILNYSNYISCLFIVIINGD 726
            T   +E +W LID   LT     P  ++   Y+     + + G+
Sbjct: 1085 TAKTNEEMWELIDTEKLTDRLPYPWTMDNERYVKVDMYMNLEGE 1128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,493
Number of Sequences: 438
Number of extensions: 4383
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)