Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0077
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    28   0.073
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.17 
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.17 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.17 
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    27   0.17 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.68 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   2.7  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   2.7  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   2.7  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   2.7  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   2.7  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   2.7  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   2.7  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   2.7  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   2.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.4  

>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 0.073
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T KI + W    D+   HCD + G   +D
Sbjct: 118 YVPPGIFKSTCKIDITWFPFDDQ---HCDMKFGSWTYD 152


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T K+ + W    D+   HCD + G   +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T K+ + W    D+   HCD + G   +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T K+ + W    D+   HCD + G   +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 152 FLDDGVYRGTVKIQLKWLQESDELSLHCDHELGISFWD 265
           ++  G+++ T K+ + W    D+   HCD + G   +D
Sbjct: 118 YVPPGIFKSTCKMDITWFPFDDQ---HCDMKFGSWTYD 152


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 525  RGVCSPASTSRDTRPRSKSA*HDP-GNMVALSN 620
            R   SPAS+ R   PRS +    P G++ ALS+
Sbjct: 932  RNSASPASSDRSGTPRSTNGDRKPGGSLGALSS 964


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 82  TPPLSTPSNSNATKSS 97


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 183 TVPL*TPSSRNGSKSS 136
           T PL TPS+ N +KSS
Sbjct: 126 TPPLSTPSNSNATKSS 141


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 551 RRSRGTYAARCLDEAVWLLP*SLHPDL 471
           RRSR T+ A  LDE       + +PD+
Sbjct: 221 RRSRTTFTAHQLDELEKAFERTQYPDI 247


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 412 RQLYMTFGSLG 380
           RQ+Y+ FGS+G
Sbjct: 274 RQMYVDFGSVG 284


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +1

Query: 586  STTPGTWWPS 615
            +T P TWW S
Sbjct: 1036 TTKPSTWWSS 1045


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 537 SPASTSRDTRPRSKSA*HDPGNMVA 611
           SP+STS    PRS  +   P  +++
Sbjct: 284 SPSSTSSSPEPRSPESLFKPVTVIS 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,191
Number of Sequences: 336
Number of extensions: 3593
Number of successful extensions: 23
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)